Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq191 241 1e-58 seq516 212 7e-50 seq564 125 8e-24 seq36222 82.4 9e-11 seq95 82.4 9e-11 seq79 82.4 9e-11 >seq191 Length=10176270 Score = 241 bits (266), Expect = 1e-58 Identities = 607/918 (66%), Gaps = 5/918 (1%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | || | ||| |||| |||||||| || || ||| ||| | || ||| Sbjct 8683377 TTATGCCTCAGGTGCTCATCTAAACACTGGATGGCAAAGTGGTCGATATCCACGTCAAAC 8683436 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||||||| ||| | | | | ||||| | | ||| || | |||||| Sbjct 8683437 TTATTGGCAAACAGGTGGTGCCGG--CGT-AGCATCCAGCTCAAATCGCCAGCTCCGAAA 8683493 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | ||||||||| || |||||||| || ||||| ||||| || |||| || | | ||| Sbjct 8683494 ATGCACACGGAGCGGACGTGCACCCCACTGCAAGGCGGGTAGGGGGCGCCCTTGGAAACA 8683553 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || || || |||| |||||||| || | ||| | | || ||||||||||| ||| Sbjct 8683554 TCACCTTCAAAGTACTGCCACTTGACCAGCCTCGCCACCGCGTGCATGTCGGACAAGTCA 8683613 Query 162307 TACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | || |||| ||| | || || || | || | ||||| | || ||||| Sbjct 8683614 TACTTATGG-CTTACGGACACTGAGCCTGGCACTTCGGGGATCCTCTGGATTGTGGCCCA 8683672 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 | || ||| ||||| || || || || | | |||| ||||||||| || | ||| Sbjct 8683673 GACGTATTCATCTGGGCTGTAGGTGTCTTGTGCCCACGCCATGAACTTTTGGATCTTTTC 8683732 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | ||||| || || || || || Sbjct 8683733 ATTTTCTAGCACATACCCCACATATCCCCTACTGACCACGAAGTAGGCACTGCCTGAGAA 8683792 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | ||||||||| | | || | Sbjct 8683793 AATGGGCGTTTCCAGCGGAGGACGCATTTTGACGGTCCCCGTGTTGGTCAGTTTCCCATT 8683852 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 ||||| ||| ||| |||| || | |||| ||| | | ||||| || Sbjct 8683853 CACGACTGCGTAATGCTTTTTCCATCTTTCTTCCTTATTGGATGGCATCCTCTCGGTTTC 8683912 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || |||| |||| || | || |||| | || || || || ||||| |||| Sbjct 8683913 CAGGTTGTTTTCACCCATTAACGATTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAAT 8683972 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725 ||||| || || |||||||| || | || ||||| | || | || ||| || Sbjct 8683973 AGGAAAATCCTGACCACAGAGATTGATCAAGTACTTCCAGTGTGTACTCATTCGGTAGAG 8684032 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 || | | ||||| ||||||||||| || ||||||||||| || || || || ||||| Sbjct 8684033 GTCTTTCATGCAGTTGAGATCGGCCTGAACTCGACTCCACGATGCATAAACCACACTCTC 8684092 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 |||| | |||| || ||||| || | |||||| || | || | |||| || | | Sbjct 8684093 CAACTGACTGGCCACGAAGACGTTATGGAAACAGGACGCGATGCTGGTCACCGCAGCTAA 8684152 Query 162846 GAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905 ||| | || | || || || ||||| | ||| || | ||||||||| |||||| Sbjct 8684153 GAAGGACTCCTCTGACTTTCTGTCCACGTGAATGCAATAGAAATTCTGAGGCATGTAGAT 8684212 Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965 ||||||||| | || || | ||| || || || || || |||||||||||||| || || Sbjct 8684213 GGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACGATAGAATATGCGAT 8684272 Query 162966 GGGGAACTCAGCCTCCTC 162983 || ||||| ||||| || Sbjct 8684273 CGGAAACTCCGCCTCTTC 8684290 Score = 107 bits (118), Expect = 2e-18 Identities = 172/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | || | ||| |||| |||||||| || || ||| ||| | || ||| Sbjct 8681227 TTATGCCTCAGGTGCTCATCTAAACACTGGATGGCAAAGTGGTCGATATCCACGTCAAAC 8681286 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||||||| ||| | | | | ||||| | | ||| || | |||||| Sbjct 8681287 TTATTGGCAAACAGGTGGTGCCGG--CGT-AGCATCCAGCTCAAATCGCCAGCTCCGAAA 8681343 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | ||||||||| || |||||||| || ||||| ||||| || |||| || | | ||| Sbjct 8681344 ATGCACACGGAGCGGACGTGCACCCCACTGCAAGGCGGGTAGGGGGCGCCCTTGGAAACA 8681403 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || || || |||| |||||||| || | ||| | | || ||||||||||| ||| Sbjct 8681404 TCACCTTCAAAGTACTGCCACTTGACCAGCCTCGCCACCGCGTGCATGTCGGACAAGTCA 8681463 Query 162307 TACTT 162311 ||||| Sbjct 8681464 TACTT 8681468 >seq516 Length=4095636 Score = 212 bits (234), Expect = 7e-50 Identities = 240/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | ||||| || ||||| || ||||| ||||| || | || Sbjct 1044904 CATAGAGGGTGAGGCAGGATGTTCCCGAGATCTTTCCAGAACCAAAGGTATTGAAGAGAC 1044963 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| || || || |||| |||||| ||||| || || | || || ||| || Sbjct 1044964 ACATGTAACACCCCTCATCTTCCAGGGTGGTATTCCAGAAGGTGATGGTCGAGTTTTGGA 1045023 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || || || | | |||||| || | |||||||| |||||||| || | Sbjct 1045024 GTCCCAGCTCGGTGATATTGATTCTGTCCTTATAGGCAGGCTGGATCACAACACCATGGT 1045083 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| |||||| | |||||||| || || Sbjct 1045084 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTGACAGCCTTCTTTTTCTGCCATGTCACAC 1045143 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 |||| ||||| | | |||| ||||| |||||||| ||||||||||||||| | || Sbjct 1045144 TTAAGACTTCCTGGGAACTTTGCAGAGAACATCTTAAGAAAGCAGGTGTGTTCAGTGGTT 1045203 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| || || || ||||| Sbjct 1045204 CTCTTTCATCCTGGGTCACCAC 1045225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 ||||| ||| || || ||| | |||| ||| | || | ||| |||||||||| | Sbjct 1041313 GTTTGCTTGAAGTTGGTCACACTTCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 1041369 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 || || || | || || ||||| || | || |||| || ||||| || ||||| || Sbjct 1041370 CCAACCTGTTTCTTGGGGTCTTTGACATAGAGGGTGCTGGTGACAGACGTGGTCCCATTT 1041429 Query 171626 CGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATA 171685 | | || | | | |||||| || || || || || | ||||| ||||| | | Sbjct 1041430 GGGTTTAACAGACTCTCAGTACTGTTGTCAATCCCTGACACCGCAACCTTCCAGGAGAGT 1041489 Query 171686 ACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCA 171745 || || | ||| | |||||| ||||||||||| || |||| |||||| ||||| | Sbjct 1041490 ACTGGGGGTGGGCGAGCAGTGGCAGAGCAAGTGATATTTAGGTGATCTTCAAAGAATTTG 1041549 Query 171746 TAGTG 171750 ||||| Sbjct 1041550 TAGTG 1041554 >seq564 Length=8425637 Score = 125 bits (138), Expect = 8e-24 Identities = 394/598 (66%), Gaps = 23/598 (4%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| |||||| | | |||||| || | | || || | | | Sbjct 1673120 TCCAGTTAAAGTAACTAAGATACAACTTATTGTTTTTGTCCACTTCCTTCAGATACTTTG 1673179 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 1673180 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 1673239 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || || || | ||||| | || |||| || || Sbjct 1673240 TCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 1673299 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 1673300 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 1673359 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| |||| | || || | | ||| | ||| ||||| | | | | Sbjct 1673360 TACACGTAGATATGGTAG--GTATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 1673417 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACGT 177243 ||| || ||| || || ||| ||| || | ||| ||| || || || | | | | Sbjct 1673418 CCCATAGGTATGAATTTCAATGCTTTTGCTTAACTCATTGTAATA-CTTGACCCTGGCAT 1673476 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||||||||| ||||| ||||| | || || Sbjct 1673477 GCTCAGGGTTCCAGTTACTTACAACCCAGCAAACCAACTT-TTCTTTACTTGGCAC---- 1673531 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| |||| || | || | | || | || | | ||||| ||||| || ||||| | Sbjct 1673532 TTCAAATACGAA-GGGGTTTGTGCTCACTGTCAAGAAGCCATAAGGCACTTGGATATCTG 1673590 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC----CTTGTTTGAAG 177416 |||| || | ||| || | || || ||||| | || || |||| ||| | || || Sbjct 1673591 AGTCCCGGCGGTAAGTCAGAGTCAGGTTGAACAAGTGCTCAATACCACTCTTCTGTGGAG 1673650 Query 177417 GGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGG 177474 ||| | | || ||||| || |||||||| ||||| || || |||| ||| |||| Sbjct 1673651 ----TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTGG 1673704 >seq36222 Length=1583 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 162736 CAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTG 162795 |||||||| || ||||| || | ||| || || || || || || ||| | || || Sbjct 1109 CAGTTCAGGTCAGCCTGCACCCTGGACCAGGAGGCATAAACCACCTTCACCAGCTTACTG 1168 Query 162796 GCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACAT--CG 162853 || | |||||||| ||| || || | || || | || ||| | ||| | | Sbjct 1169 GCTAAGAAGACATTTGGGAAGCATGATATAATGGCCTTGACTGCCTCTTGGAAAGTTTCT 1228 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 || ||||| | || ||||| | |||||||| |||||||||||||| | || | || Sbjct 1229 GGGGA-CTTTC-TGTCCACGTGGATGCAGTATATGTTCTGAGGGGCGTACACAGCTCGCA 1286 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 | | ||||| || | || ||||| | ||| ||||| |||||||| || || ||||| | Sbjct 1287 GCAGCCTCTCAAAGTTTTCAATCTTCTCGTGAACCACCATAGAATATGCAATAGGGAAGT 1346 Query 162974 C 162974 | Sbjct 1347 C 1347 >seq95 Length=10138657 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 162736 CAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTG 162795 |||||||| || ||||| || | ||| || || || || || || ||| | || || Sbjct 6671687 CAGTTCAGGTCAGCCTGCACCCTGGACCAGGAGGCATAAACCACCTTCACCAGCTTACTG 6671746 Query 162796 GCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACAT--CG 162853 || | |||||||| ||| || || | || || | || ||| | ||| | | Sbjct 6671747 GCTAAGAAGACATTTGGGAAGCATGATATAATGGCCTTGACTGCCTCTTGGAAAGTTTCT 6671806 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 || ||||| | || ||||| | |||||||| |||||||||||||| | || | || Sbjct 6671807 GGGGA-CTTTC-TGTCCACGTGGATGCAGTATATGTTCTGAGGGGCGTACACAGCTCGCA 6671864 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 | | ||||| || | || ||||| | ||| ||||| |||||||| || || ||||| | Sbjct 6671865 GCAGCCTCTCAAAGTTTTCAATCTTCTCGTGAACCACCATAGAATATGCAATAGGGAAGT 6671924 Query 162974 C 162974 | Sbjct 6671925 C 6671925 >seq79 Length=8883450 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 162736 CAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTG 162795 |||||||| || ||||| || | ||| || || || || || || ||| | || || Sbjct 3240825 CAGTTCAGGTCAGCCTGCACCCTGGACCAGGAGGCATAAACCACCTTCACCAGCTTACTG 3240884 Query 162796 GCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACAT--CG 162853 || | |||||||| ||| || || | || || | || ||| | ||| | | Sbjct 3240885 GCTAAGAAGACATTTGGGAAGCATGATATAATGGCCTTGACTGCCTCTTGGAAAGTTTCT 3240944 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 || ||||| | || ||||| | |||||||| |||||||||||||| | || | || Sbjct 3240945 GGGGA-CTTTC-TGTCCACGTGGATGCAGTATATGTTCTGAGGGGCGTACACAGCTCGCA 3241002 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 | | ||||| || | || ||||| | ||| ||||| |||||||| || || ||||| | Sbjct 3241003 GCAGCCTCTCAAAGTTTTCAATCTTCTCGTGAACCACCATAGAATATGCAATAGGGAAGT 3241062 Query 162974 C 162974 | Sbjct 3241063 C 3241063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578065057200000