Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq53 111 4e-19 seq199 93.3 1e-13 >seq53 Length=2810707 Score = 111 bits (122), Expect = 4e-19 Identities = 348/534 (65%), Gaps = 9/534 (2%) Strand=Plus/Plus Query 110468 TCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTT 110527 |||||| |||| || || || || || || || ||| | | || | || | | || Sbjct 1301909 TCATGCCTCTCCCACTCTCTTCAATGCTGGCACCAATCGCCCAGAACTTTCTACCTATTT 1301968 Query 110528 TCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGC 110587 ||||| || || ||||| |||||||| ||||||||| |||| || | ||| Sbjct 1301969 CCTTCTGAACATGAAAGATGACAGCATTGAAGGGATTTATGATACTCTAAAGCAGTGTGC 1302028 Query 110588 TCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGG 110647 | | |||||||| |||| ||||||||| || || | |||||| | | || Sbjct 1302029 TTTGATTTCTAAGTCTGCTGGGGGAATTGGTGTTGCTGTGAGTTGTATTCGGGCTACTGG 1302088 Query 110648 -AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCT 110706 ||| | | || | || || ||| | ||| ||||| |||||| | ||||| | Sbjct 1302089 CAGCTACCTT-GCTGGGACTAATGGCAATTCCAATGGCCTTGTACCAATGCTGAGAGTAT 1302147 Query 110707 TCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTA 110763 || | || || ||| || |||||||||| || | | ||| ||||||||| Sbjct 1302148 ACAGTAATACAGCTCGATACGTAGATCAAGGTGGAAACAAGCGTCTTGGGGCATTTGCTA 1302207 Query 110764 TCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAG 110823 | || || |||||| ||||| ||| || ||||| || | || | || || || Sbjct 1302208 TTTACCTGAAACCTTAGCATTTAGACATCTTTGAGTTTCTCGATTTAAAGAAGAACACAG 1302267 Query 110824 GATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883 || |||||||| || | ||| | || | ||| | |||||||||||| | |||| Sbjct 1302268 GAAAGGAAGAACAGCATGCGAGGGATCTTTTCTTTGCCCTTTGGATTTCAGATCTCTTCA 1302327 Query 110884 TGAAACGTGTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGG 110941 ||||| | || || ||| || | |||||| | |||||||| || | |||||| Sbjct 1302328 TGAAATGGGTGGAAACTAAT--CAGGACTGGTCTTTGATGTGTCCAAATGAGTGTCCTGG 1302385 Query 110942 TCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAA 110995 || ||| || | ||| |||| ||||| | || || ||||| ||||| || Sbjct 1302386 CCTGGATGAAGTTTGGGGAGAAGAATTTGAGAAGCTATATGAAAAGTATGAGAA 1302439 >seq199 Length=4383281 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 131857 AAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTAT 131916 |||| |||| || |||||| ||| ||||| || ||||| ||||| |||| |||||| Sbjct 4204613 AAGAGTTGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTAT 4204672 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 || ||||| |||||| | || | ||||||||||| | || |||||| || ||||| Sbjct 4204673 ATTCTGGCTGAAGAAGAGAGGTCTTATGCCTGGACTTACTTTTTCCAATGAACTCATCAG 4204732 Query 131977 GAGAGATGA 131985 |||||||| Sbjct 4204733 CAGAGATGA 4204741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186041093520750