Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq42965 102 5e-17 seq436 95.1 8e-15 seq459 93.3 3e-14 >seq42965 Length=562198 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | || || || ||||| |||||| || |||||||| || | Sbjct 301182 CACCTCCCCTCAAGCGCAGGACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAG 301241 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| |||||| || ||||| ||||| | |||||| || | | Sbjct 301242 ACAGGGTGCGCCCATCTTCCAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 301301 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | |||||| ||||| || ||| || | | | ||| |||||| || | ||| Sbjct 301302 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCC 301360 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | || || || ||||||||||| Sbjct 301361 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301410 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 302552 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 302611 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | |||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 302612 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 302671 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| || | | | ||| |||||| || | || || Sbjct 302672 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCGAC 302730 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || |||| || ||||| ||||||||||| Sbjct 302731 CTCGAGGGTGATGGTCTTGCCAGTTAGGGTCTTTACGAAGATCTGCAT 302778 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 301412 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301471 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | |||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 301472 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 301531 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| || | | | ||| |||||| || | ||||| Sbjct 301532 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCAC 301590 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 301591 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301638 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 301640 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301699 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | |||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 301700 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 301759 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| || | | | ||| |||||| || | ||||| Sbjct 301760 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCAC 301818 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 301819 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301866 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 301868 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 301927 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | |||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 301928 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 301987 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| || | | | ||| |||||| || | ||||| Sbjct 301988 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCAC 302046 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 302047 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302094 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 302096 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 302155 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | |||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 302156 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 302215 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| || | | | ||| |||||| || | ||||| Sbjct 302216 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCAC 302274 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 302275 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302322 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || || ||| ||| || || |||||||| ||||| Sbjct 302324 CCACCTCGGAGACGGAGTACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 302383 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || | |||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 302384 AGGGGGCGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 302443 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| || | | | ||| |||||| || | ||||| Sbjct 302444 ATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCAATGGTGTCACTGGGCTCCAC 302502 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 302503 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 302550 >seq436 Length=2687165 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| || | |||| || ||||| |||||| || |||||||| || || Sbjct 806592 ACCACCTCTCAGGCGCAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGA 806651 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 806652 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 806711 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || || || ||| |||| || | |||||| || | ||||| Sbjct 806712 GATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTCACTGGGTTCCA 806770 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || |||||||||||||| Sbjct 806771 CCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT 806819 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || ||||| |||||| || |||||||| || || Sbjct 806365 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 806424 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | ||||||||| | || Sbjct 806425 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGAGGG 806484 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||||| || || || |||| ||| ||| |||||| || | ||||| Sbjct 806485 ATGCCTTCTTTATCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCCAC 806543 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 806544 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 806592 >seq459 Length=1943734 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 33526 CCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGT 33585 |||| || ||| | |||||| || || ||| |||||| || || ||||| | |||||| Sbjct 1019174 CCTCGCAGACGCAGCACCAAGTGCAGCGTGGACTCTTTCTGGAT-TTGTAGTTGGAGAGA 1019116 Query 33586 GTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACA 33645 ||||| | || |||| ||||| || ||||| |||| | | ||||| || | || | | Sbjct 1019115 GTGCGGCCATCTTCCAGCTGTTTGCCTGCAAATATCAGATGTTGCTGGTCCCGTGGGATA 1019056 Query 33646 CCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTC 33704 ||||| ||||| ||||| |||| |||| | | |||||| || | ||| || || Sbjct 1019055 CCTTCCTTGTCTTGGATTTTG-GTTTTGACATTCTTGATGGTGTCACTGGGTTCGACCTC 1018997 Query 33705 AACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||| | || || || | | || || | ||||||||||| Sbjct 1018996 AAGGGTGGTGGTCTTGCCGGGCAGGGTCTTCATGAAGATCTGCAT 1018952 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 33526 CCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGT 33585 |||| || ||| | |||||| || || ||| |||||| || || ||||| | |||||| Sbjct 1020678 CCTCGCAGACGCAGCACCAAGTGCAGCGTGGACTCTTTCTGGAT-TTGTAGTTGGAGAGA 1020620 Query 33586 GTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACA 33645 ||||| | || |||| ||||| || ||||| |||| | | ||||| || | || | | Sbjct 1020619 GTGCGGCCATCTTCCAGCTGTTTGCCTGCAAATATCAGATGTTGCTGGTCCCGTGGGATA 1020560 Query 33646 CCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTC 33704 ||||| ||||| ||||| |||| |||| | | |||||| || | ||| || || Sbjct 1020559 CCTTCCTTGTCTTGGATTTTG-GTTTTGACATTCTTGATGGTGTCACTGGGTTCGACCTC 1020501 Query 33705 AACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||| | || || || | | || || | ||||||||||| Sbjct 1020500 AAGGGTGGTGGTCTTGCCGGGCAGGGTCTTCATGAAGATCTGCAT 1020456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328500691440000