Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq338 102 8e-17 seq46174 96.9 3e-15 seq5 96.9 3e-15 seq44605 93.3 4e-14 seq436 93.3 4e-14 seq432 93.3 4e-14 seq42965 89.7 5e-13 seq472 89.7 5e-13 seq108 87.8 2e-12 seq50077 84.2 2e-11 seq47707 84.2 2e-11 seq598 84.2 2e-11 >seq338 Length=5205875 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| || |||||| |||||| | |||||| || | | Sbjct 2398051 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCA 2398110 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| ||||| || ||||| ||||| ||||| ||| | Sbjct 2398111 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACA 2398170 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| || || |||| || | || || || || || |||||| Sbjct 2398171 TTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 2398230 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 2398231 ACGAAAATCTGCAT 2398244 >seq46174 Length=2177 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| || |||||| |||||| | |||||| || | | Sbjct 1920 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCA 1861 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| |||| |||||| ||||| ||||| ||| | Sbjct 1860 AAAATCAGTCTTTGCTGATCAGGAG----GCCTTCCTTATCCTGGATTTTGGCTTTTACA 1805 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| || || |||| || | || || || || || |||||| Sbjct 1804 TTTTCTATTGTATCTGACGGTTCAACCTCGAGGGTAATGGTCTTCCCTGTGAGGGTTTTT 1745 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 1744 ATGAAAATCTGCAT 1731 >seq5 Length=157846 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| || |||||| |||||| | |||||| || | | Sbjct 1239 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCA 1180 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| |||| |||||| ||||| ||||| ||| | Sbjct 1179 AAAATCAGTCTTTGCTGATCAGGAG----GCCTTCCTTATCCTGGATTTTGGCTTTTACA 1124 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| || || |||| || | || || || || || |||||| Sbjct 1123 TTTTCTATTGTATCTGACGGTTCAACCTCGAGGGTAATGGTCTTCCCTGTGAGGGTTTTT 1064 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 1063 ATGAAAATCTGCAT 1050 >seq44605 Length=175201 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 || || | ||| || | ||||||||||| ||||||||||| | |||||| |||| Sbjct 1700 AACACAAGATGAATCGTGGACTCTTTTTGGATGTTGTAGTC----AAAGTACGCCCATCT 1755 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| || | | | || || | || ||||| ||||| || ||||| ||||| Sbjct 1756 TCCAACTGTTAGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 1815 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||||| ||| | | ||| | ||||| ||||| || |||| || | || Sbjct 1816 TGGATTTTGGCTTTTACATTTTCTATTGTATCCAAAGGCTCAACCTCGAGGGTGATGGTC 1875 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | || |||||||||||||||||||| Sbjct 1876 TTCCCTGGGAGGGTTTTTATGAAAATCTGCAT 1907 >seq436 Length=2687165 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||||||||| | || || |||||| ||||| || || | | Sbjct 806398 GACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCA 806457 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| ||||| |||||||||||||| || || |||| Sbjct 806458 AAGATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 806517 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| |||| || | || || || ||||| || || Sbjct 806518 TTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 806577 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 806578 ACGAAGATCTGCAT 806591 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||||||||| | || || |||||| ||||| || || | | Sbjct 806626 GACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCA 806685 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| || || |||| Sbjct 806686 AAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 806745 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||||| |||| || | || || ||||| ||||| || Sbjct 806746 TTCTCAATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTC 806805 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 806806 ACAAAGATCTGCAT 806819 >seq432 Length=6714211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| || |||||| |||||| | |||||| || | | Sbjct 4307100 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCATCTTCCAACTGTTTGCCAGCA 4307159 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| ||||| || ||||| ||||| ||||| ||| | Sbjct 4307160 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACA 4307219 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | || || |||| || | || || || || || ||||| Sbjct 4307220 TTTTCTATTGTATCTGATCGTTCAACCTCGAGGGTGACGGTCTTCCCTGTGAGGATTTTT 4307279 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 4307280 ATGAAAATCTGCAT 4307293 >seq42965 Length=562198 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| || || || | |||||||||| || ||||||||||| || ||| || Sbjct 301192 CAAGCGCAGGACTAAGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 301251 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| || ||||| || | | |||| | | ||| || || ||||| || ||||| Sbjct 301252 CCCATCTTCCAGTTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTC 301311 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | |||||||| |||| || Sbjct 301312 CTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGT 301371 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || |||||||| || || | ||| |||||||| Sbjct 301372 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 301410 >seq472 Length=1492349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| || |||||| ||||| | |||||| || | | Sbjct 1223251 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGCCCGTCTTCCAACTGTTTGCCAGCA 1223192 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| | ||| || |||| ||||| ||||| ||| | Sbjct 1223191 AAAATCAGTCTTTGCTGATCGGAAGGAATTTCTTCCTTATCCTGGATTTTGGCTTTTACA 1223132 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| || || |||| || | || || || || || |||||| Sbjct 1223131 TTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 1223072 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 1223071 ACGAAAATCTGCAT 1223058 >seq108 Length=8981738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| | ||| || |||||| | ||| || || | | Sbjct 3100079 GACTCCTTTTGGATGTTGTAGTC----AGAGTATGCCCATCTTCCAACTGGTTGCCAGCA 3100134 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| ||||| ||| | Sbjct 3100135 CAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATTTTGACTTTTACA 3100194 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| | || || | || | || || || || || |||||| Sbjct 3100195 TTTTCTATTGTATCCGACGGTTTAACCTCAAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 3100254 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 3100255 ATGAAAATCTGCAT 3100268 >seq50077 Length=1687503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| || | | || ||||| | |||||| || ||| Sbjct 738164 GACTCCTTTTGGATGTTGTAGTCAGACAAAGCATGCCCATCTTTCAACTGTTTGCCAGAA 738223 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| ||||| || ||||| ||||| ||||| ||| | Sbjct 738224 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACA 738283 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| || || | || || | || || || || || ||||| Sbjct 738284 TTTTCTATTGTATCCGACGGTTCAACCTTGAGGGTGATGGTCTTCCCTGTGAGGATTTTT 738343 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 738344 ACGAAAATCTGCAT 738357 >seq47707 Length=6282480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||| || || |||||| |||||| | ||| || | | | Sbjct 1043787 GACTCCTTTTGGATGTTGTAATCAGACAAAGTACGCCCATCTTCCAACTGCTTGGCAGCA 1043728 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| ||||| || ||||| ||||| | ||||| ||| | Sbjct 1043727 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTTGATTTTGGCTTTTACA 1043668 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||| ||| || || || | || | || || || || || |||||| Sbjct 1043667 TTTTCTATTGTATTTTACGGTTCAACCTCAAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 1043608 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 1043607 ATGAAAATCTGCAT 1043594 >seq598 Length=3788045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| ||||||||||| || |||| | |||||| |||||||| || | | Sbjct 3751575 GATTCCTTTTGGATGTTGTAGTCAGACAGAGTACACCCATCTTCCAGCTGTTTGCCAGCA 3751516 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | || ||||| ||||| || || | || || ||||| ||| | Sbjct 3751515 AAAATCAGTCTTTGCTGATCAGGAGGAATTCCCTTCTTCTCCTGGATTTTGGCTTTTACA 3751456 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| || || |||| || | || || || || || |||||| Sbjct 3751455 TTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTT 3751396 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 3751395 ACGAAAATCTGCAT 3751382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476308849770000