Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq44605 91.5 1e-13 seq598 91.5 1e-13 seq338 86.0 6e-12 seq47707 82.4 7e-11 seq472 82.4 7e-11 >seq44605 Length=175201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| | || || || | ||||| | || || ||| | Sbjct 861 CAAGATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACCATCACCCTAGAGGTTGAACC 802 Query 25231 CAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | |||| || || | |||||| ||||| | ||| || || || || |||| Sbjct 801 CTTTGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGGTAAGGAAGGAATTCCTCCCG 742 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG---ATAGAAATGTCAGCG 25346 ||||||||||||| |||| | |||||||| | ||||||| ||| |||| | Sbjct 741 ATCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCATA-CTTTGTC--TG 685 Query 25347 ATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 | ||||| || ||||| || ||||| ||||| | ||||||||| Sbjct 684 ACTACAACATCCAAAAGGAGTCCACACTTCATCTTGTGTTAAGA 641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || ||||||| | | || || | ||||| |||| || || | Sbjct 1911 CAAGATGCAGATTTTCATAAAAACCCTCCCAGGGAAGACCATCACCCTCGAGGTTGAGCC 1852 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | |||||| ||||| ||||| || || || || || || Sbjct 1851 TTTGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 1792 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | ||| |||| | ||||||| | | | | || || Sbjct 1791 TCAGCAAAGACTGATTTTTGCTGGCTAACAGTTGGAAGATGGGCGTACTTT----GACTA 1736 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || |||||||| ||||| |||||| | ||||||||| Sbjct 1735 CAACATCCAAAAAGAGTCCACGATTCATCTTGTGTTAAGA 1696 >seq598 Length=3788045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || || || | ||||| |||| || ||| | Sbjct 3751378 CAATATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACC 3751437 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | |||||| ||||| || || |||| || || || || Sbjct 3751438 GTCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGAGAAGAAGGGAATTCCTCCTGA 3751497 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | |||||||| || ||||||| | | | | || || Sbjct 3751498 TCAGCAAAGACTGATTTTTGCTGGCAAACAGCTGGAAGATGGGTGTACTCTGTCTGACTA 3751557 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| |||||||| ||||| | |||| ||| Sbjct 3751558 CAACATCCAAAAGGAATCCACACTTCATCTTCTGTTGAGA 3751597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| | | || || | ||||| |||| || ||| | Sbjct 1806472 CAAGATGCAGATTTTTGTAAAAACCCTGCCAGGGAAGACTATCACCCTCGAGGTTGAA-C 1806414 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || | ||||| | || | |||||| |||||| ||||| || || || || || | Sbjct 1806413 CATCAGATACAACAGAAAATGTAAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCTG 1806354 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 | ||||||||||| |||| ||||| || | ||||||| || | | | || | Sbjct 1806353 ACCAGCAAAGACTGATTTTTTCTGGCAAGCAGTTGGAAGATGGGAGTACTCTGTCTGACT 1806294 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| |||||||| ||||| | ||||| ||| Sbjct 1806293 GCAACATCCAAAAGGAATCCACGCTTCATCTTGTGTTGAGA 1806253 >seq338 Length=5205875 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || || || | ||||| |||| || ||| | Sbjct 2398248 CAAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACC 2398189 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | |||||| ||||| ||||| || || || || || || Sbjct 2398188 GTCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 2398129 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | |||||||| | ||||||| | | | | || || Sbjct 2398128 TCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGGCGTACTTTGTCTGACTA 2398069 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| || |||| ||||| | ||||| ||| Sbjct 2398068 CAACATCCAAAAGGAGTCCATGCTTCATCTTGTGTTGAGA 2398029 >seq47707 Length=6282480 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || ||||||| | || || || | ||||| | || || ||| | Sbjct 1043590 CAAGATGCAGATTTTCATAAAAACCCTCACAGGGAAGACCATCACCCTTGAGGTTGAACC 1043649 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | |||| || || | |||||| ||||| | ||||| || || || || || || Sbjct 1043650 GTAAAATACAATAGAAAATGTAAAAGCCAAAATCAAGGATAAGGAAGGAATTCCTCCTGA 1043709 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | | ||| || | ||||||| | | | | ||||| Sbjct 1043710 TCAGCAAAGACTGATTTTTGCTGCCAAGCAGTTGGAAGATGGGCGTACTTTGTCTGATTA 1043769 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| || ||||| ||||| | ||||| ||| Sbjct 1043770 CAACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGA 1043809 >seq472 Length=1492349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| | || || || | ||||| |||| || ||| | Sbjct 1223054 CAAGATGCAGATTTTCGTAAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACC 1223113 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | |||||| ||||| ||||| || | || || |||| Sbjct 1223114 GTCGGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGAAATTCCTTCCGA 1223173 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| |||| | |||||||| | ||||| | | | | | || || Sbjct 1223174 TCAGCAAAGACTGATTTTTGCTGGCAAACAGTTGGAAGACGGGCGTACTTTGTCTGACTA 1223233 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| || ||||| || ||||| ||||| | ||||| ||| Sbjct 1223234 CAACATCCAAAAGGAGTCCACGCTTCATCTTGTGTTGAGA 1223273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444812043240000