Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq516 246 4e-60 seq721 168 8e-37 seq388 158 1e-33 seq598 147 3e-30 seq48489 122 1e-22 >seq516 Length=4095636 Score = 246 bits (272), Expect = 4e-60 Identities = 246/319 (77%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || | | |||||||| || || | | | | ||| || ||| Sbjct 1045225 GTGGTGACCCAGGATGAAAGAGAACCACTGAACACACCTGCTTTCTTAAGATGTTCTCTG 1045166 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| ||||| || | | ||| || |||||||||| ||| | || ||||| Sbjct 1045165 CAAAGTTCCCAGGAAGTCTTAAGTGTGACATGGCAGAAAAAGAAGGCTGTCAGCCCAGAA 1045106 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| || || ||| ||||||| || |||||||||| Sbjct 1045105 AACATGGTCACCTTCAGCAAGAACCATGGTGTTGTGATCCAGCCTGCCTATAAGGACAGA 1045046 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 || || |||||| |||| |||||||||||||| |||||||| || |||||||||||| | Sbjct 1045045 ATCAATATCACCGAGCTGGGACTCCAAAACTCGACCATCACCTTCTGGAATACCACCCTG 1044986 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||||||| |||| || ||||| || |||||||| ||||| || |||||||| Sbjct 1044985 GAAGATGAGGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGAAAGATCTCGGGA 1044926 Query 171372 GTGGCCTGCCTCACCCTCT 171390 ||||||||||||||| Sbjct 1044925 ACATCCTGCCTCACCCTCT 1044907 Score = 170 bits (188), Expect = 2e-37 Identities = 204/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || || ||||| ||||| || ||||| || ||||| || Sbjct 1041575 GTACAGCCCACAGTATTCCTTCACTACAAATTCTTTGAAGATCACCTAAATATCACTTGC 1041516 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||| ||||| || || | | |||||| || ||| ||||| ||||| Sbjct 1041515 TCTGCCACTGCTCGCCCACCCCCAGTACTCTCCTGGAAGGTTGCGGTGTCAGGGATTGAC 1041456 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| ||| | | | ||||| || || ||||| ||||| ||| | Sbjct 1041455 AACAGTACTGAGAGTCTGTTAAACCCAAATGGGACCACGTCTGTCACCAGCACCCTCTAT 1041396 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| ||| | || |||||||| |||||||| ||| |||||||||| Sbjct 1041395 GTCAAAGACCCCAAGAAACAGGTTGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGA 1041336 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||||| | | |||| | ||||| |||| Sbjct 1041335 AGTGTGACCAACTTCAAGCAAACCCTGAGCAAAGGTA 1041299 >seq721 Length=8920270 Score = 168 bits (186), Expect = 8e-37 Identities = 136/167 (81%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||| Sbjct 5232619 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 5232560 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| |||| |||| ||| | |||||||| || |||| Sbjct 5232559 TGCCCCAGGCTGAGAACCACA------------GCCCAGACGTCAAGGAGCACGTGAACT 5232512 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||||||||||||||| ||||| || || || |||||||||| ||| Sbjct 5232511 CTCTGGGGGAAAAGCTGAAGACGCTCAGGTTGCGGCTGCGGCGCTGT 5232465 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 5230284 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5230225 Query 178522 TAGAAGCTTACATGACAACAAAAAT 178546 ||||||| ||||||||||| || || Sbjct 5230224 TAGAAGCCTACATGACAACGAAGAT 5230200 >seq388 Length=3990105 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||||||||| || | ||| || | ||| || |||||||| | |||||||| |||||||| Sbjct 2997476 CTTAAGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAA 2997417 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || ||||||||||| |||||||| || ||||| || || Sbjct 2997416 GGGCACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATC 2997357 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| || ||||| || ||||||||||| Sbjct 2997356 CACCACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCAT 2997312 >seq598 Length=3788045 Score = 147 bits (162), Expect = 3e-30 Identities = 511/799 (64%), Gaps = 29/799 (4%) Strand=Plus/Plus Query 146803 TGCGGGTGGTAGCCCTCGAGGGCAAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACC 146862 || || | ||| || |||| ||| ||||| | ||||||| || || | ||| || Sbjct 455210 TGTGGATTGTATCCTTCGACCTGAAAGTCTTCAGGTTTGAAATCATCAATTTTCTCAACT 455269 Query 146863 CGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGG 146922 | | ||| |||||||| || || |||| || | || |||||||||||| | Sbjct 455270 TTTCGAAGAATGTTGAGCTTCGGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCGGT 455329 Query 146923 GGCTC-CACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGG 146981 ||||| | || || ||||| || | ||| |||| || || |||||||| || || Sbjct 455330 GGCTCAGCCATGATTCAGGTAACTATGTGGGTCTCCCAAAGTATGTACAAAGTCACCTGG 455389 Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 | ||||| | || | ||| || | ||| || |||||| | | |||||||| |||||||| Sbjct 455390 CCTAAGGTCTGTGATGTGTGCAATCATATACGTGAGCGGGGCATAGCTGGCAATGTTGAA 455449 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACC-----------TCTGGTACAGCTGGCACGAG 147090 || |||||| ||| ||| ||||||| || | || |||||||| || Sbjct 455450 AGGCGTGCCCAGGACCACGTCTCCCGACCTCCGACCTCCGTCCGATAGAGCTGGCAGGAC 455509 Query 147091 AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCG 147150 ||||| ||||| ||||| | |||||||| || ||||| || ||| ||||||| Sbjct 455510 AGCTCGCCGTCCACCACGCAGAACTGGCAGAGCGCGTGGCCTGGAGGCTGCGCCATCAGA 455569 Query 147151 GGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTA 147210 || || | || ||||| || || | || | ||| || || || || Sbjct 455570 GGGAGAGCTTTTGGATTCCAAGCACAGGTGATGAGTCTTCTGTCGTCAGGATTGGCTTTG 455629 Query 147211 ATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAG 147270 || || || || ||| ||||| || || || |||| || Sbjct 455630 ATAGTGTCAATCACTTTTTGCAGTTGGTCTACTTTTTGCCCAGAATAGTCTGAATTCATA 455689 Query 147271 TCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCG 147330 | ||| |||||||| || |||||||||||||| || || || |||| ||| || Sbjct 455690 TTTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCACCT 455749 Query 147331 GGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGA----------CCCG-- 147378 | |||| ||||| ||| | | | ||| || | || |||| Sbjct 455750 TCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCCTGAGATCATTGTAGCCCCGAG 455809 Query 147379 ----TGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCC 147434 | | | |||||||| ||||||||| | || || | |||| || ||||| || Sbjct 455810 ATCATTGTCATCCCAGATTTTCACTCCCTTAGAAGATAGTTTATTAGCGTTTGTGGATCC 455869 Query 147435 CCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAG 147494 | ||| ||||| |||| ||| |||||||||||| |||| || || | ||||| ||||| Sbjct 455870 CTTGATAAACCAAAGCAACTCTTCCAAAACCCCCTTCCAGAATACAC-GTTGGTTGTCAG 455928 Query 147495 CAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCC 147554 ||| || || | || | ||| || | |||| | | ||||| ||||| || | Sbjct 455929 CAGAGGAAATTCATCTCGCAGGCTGTAGCGCGCCCGCATGCAGAACACCGACAGGGTATC 455988 Query 147555 CGTGCCCGTCCTGTCCTCC 147573 ||||| | | | ||||||| Sbjct 455989 CGTGCACTTGCGGTCCTCC 456007 >seq48489 Length=859937 Score = 122 bits (134), Expect = 1e-22 Identities = 536/838 (64%), Gaps = 53/838 (6%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||| | | |||| || | |||||||| ||||| | || |||| Sbjct 623597 GTACTCCCTGGTGCTCGTCATTGGCCTCCTGGGCAATGCGGTGGTGGTGTGGGTGCTCAC 623656 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | | |||||||||| |||||||| |||||| |||| ||||||||||| | || Sbjct 623657 CGGCTGCCGGAGGCTCAGGGTCATGACCGACATCTACCTGCTCAACCTGGCCATCTCCGA 623716 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 |||||| | | ||||| ||||| || ||||| || ||| | | | || | || Sbjct 623717 CCTGCTCTTCCTGTTCACTCTCCCATTCTGGAT---CTACCATGTTGCGTGGCA----TG 623769 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 |||| || || |||||| ||| | | ||| || | | || | || ||| Sbjct 623770 ACTGGGTGTTCGGGGACGCCATGTGCAAGCTGCTTTCGGGGCTCTACGACATAGCCTTGT 623829 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908 || |||| || | || ||||||||| |||| | |||||||| || || | ||| ||| Sbjct 623830 ACGGCGAGATCTTCTTCATCATCCTGCTGACGGTCGACAGGTACCTGGCCATCGTGCACG 623889 Query 8909 CGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCT 8968 | ||| | | || || ||| || | | |||||| || ||||| || | ||| Sbjct 623890 CCGTGTTTGCCCTGCGGGCCCGGACCGTCACCTTCGGCATCGTCTCCAGCGTCGTCACCT 623949 Query 8969 GGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCA 9028 || ||||| ||| | | || | || || ||| |||| || ||| || Sbjct 623950 GGGGCCTGGCAGTGCTAGCTGCCCTCCCCGAATTTGTCTTCCGGGAGTCC-------CC- 624001 Query 9029 CAGGCAAGGG--GGTCTGCCAAGCCTC-CTACAC------------AGACTTTTGGAAGG 9073 | | ||| |||||| ||| |||| ||| | ||| |||||| Sbjct 624002 ---GGATGGGTTGGTCTG-CAACCCTCAGTACCCGGAGGAGGGGGAAGAGAGCTGGAAGC 624057 Query 9074 GGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCT 9133 | | | || || |||| || | | |||| ||| ||| |||| | |||||| Sbjct 624058 GCTTCCACGTGCTGAGGATGAATATCCTGAGCCTCGCCCTCCCTCTGCTCGTGATGGCCG 624117 Query 9134 TCTGCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAACCTGC 9193 | ||||||| |||||||| || || | | || || || | ||| | Sbjct 624118 TGTGCTACTCAGGCATCATCAAAACGCTGCTGAGGTGCCCCA----GT--AAAAAGAAGG 624171 Query 9194 AC---GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCT 9250 || ||| || | |||| || |||| ||||| ||||||||||| |||| |||| Sbjct 624172 ACAAGGCCATCCGGGTCATCTTCGTCATCATGGTGGCCTATTTTGTCTTCTGGACACCCT 624231 Query 9251 ACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCAT--TTTTGG--GCCAG-ACTG 9305 ||||||| ||| | | |||| | |||| | || | | || | | ||| || Sbjct 624232 ACAACGTGACGCTTCTCCTCTACACTTTCCAAACGACCTTGGTCTTCGACGACAGCTGTG 624291 Query 9306 TGAAGCGC-GGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCC 9364 || || | ||||| ||||| |||| || ||||| | |||||| || ||| || | Sbjct 624292 TGCAGAACAGGCGC---CTGGACGTGGCGCTGCTGGTGACCGAGATGGTCTCCTACATGC 624348 Query 9365 ACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 |||||||| ||||||| || |||||||| || ||||| || |||||||| ||| ||| Sbjct 624349 ACTGCTGCATCAACCCGGTGATCTACGCCTTCGTGGGAGAGAAGTTCCAGAAGAGCCT 624406 Score = 118 bits (130), Expect = 1e-21 Identities = 212/308 (69%), Gaps = 14/308 (5%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| || |||||| | | || || | ||||| ||||||||| |||| || ||| | Sbjct 589998 GTACTCCCTAGTGTTTGTCGTGGGCCTGGTGGGCAACGCCCTGGTGGTCCTGGTGCTCCT 589939 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| ||||||||||| || |||||||||||||| ||| ||||||||||| | || Sbjct 589938 GCAGTTCAAGAGGCTCAAGAGCATGACCAACATCTACCTCCTCAACCTGGCCGTCTCCGA 589879 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGA--ACTGGT 8787 |||||| | | ||||| || ||||| |||| ||| | || | | | | ||||| Sbjct 589878 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGA-TCAGCTACAAGCTGAAGAATGACTGGG 589820 Query 8788 GGGT--GGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCAC 8845 | | ||||||| |||||| ||| | | ||| || | | || | | | Sbjct 589819 TGTTCGGGGACGC---------CATGTGCAAGCTGCTCTCGGGGCTCTACTACATCGGCC 589769 Query 8846 TGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGT 8905 | ||||| || || | || ||||||||| |||| | |||||||| || || | ||| Sbjct 589768 TATACAGTGAGATCTTCTTCATCATCCTGCTGACGGTCGACAGGTACCTGGCCATCGTGC 589709 Query 8906 ACGCGGTG 8913 | || ||| Sbjct 589708 ATGCCGTG 589701 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| || |||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 589282 TGGACCTGGCCATCCAGGTGACCGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCGG 589223 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| | || || ||||| |||||| Sbjct 589222 TGATCTATGTCTTCGTCGGCGAGCAGTTCC 589193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583117849800000