Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq436 111 1e-19 seq47707 98.7 9e-16 seq309 96.9 3e-15 seq460 86.0 6e-12 >seq436 Length=2687165 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | | || || | || ||||||||||| || ||||| Sbjct 806628 CTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 806687 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 806688 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 806747 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||| | ||||| || || || || | ||| ||||| Sbjct 806748 CTCAATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTCAC 806807 Query 35725 AAATATCTGCATTCTG 35740 ||| ||||||||| || Sbjct 806808 AAAGATCTGCATTTTG 806823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | | || || | || ||||||||||| || ||||| Sbjct 806400 CTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 806459 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||| || | ||| | || || || ||| |||||| ||||| | | Sbjct 806460 GATGAGCCTCTGCTGATCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 806519 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 806520 CTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 806579 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 806580 GAAGATCTGCAT 806591 >seq47707 Length=6282480 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | ||| ||||||||| ||||||||||| | | Sbjct 1043820 CCACCAGGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAC 1043761 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || ||| | || |||| |||||| | ||||| |||| | ||||| || | |||| Sbjct 1043760 AAAGTACGCCCATCTTCCAACTGCTTGGCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 1043701 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| |||| ||| || || | | || | | || | || ||| || Sbjct 1043700 ATTCCTTCCTTATCCTTGAT-TTTGGCTTTTACATTTTCTATTGTATTTTACGGTTCAAC 1043642 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || || | ||||| | || |||||||| Sbjct 1043641 CTCAAGGGTGATGGTCTTCCCTGTGAGGGTTTTTATGAAAATCTGCAT 1043594 >seq309 Length=2273895 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| ||| | || ||| || || |||||||| || | || || || | || Sbjct 961373 CAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATC 961314 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||||||| || ||||||||||||| ||||||||||| || || | || || |||||| Sbjct 961313 TTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCGGATGGGATGCCCTACTTGTC 961254 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 ||| || | ||| | | | | || || || | || |||| | ||||| || Sbjct 961253 TTGGATTTTGGCCGTCACATTCTCTATGGTATCCCTGGGCTCAGCCTCGAGGGTGATGGT 961194 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||| || ||||| || |||||||| Sbjct 961193 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 961161 >seq460 Length=2238155 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGT--ACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||| || | | || ||||| ||| | || |||||| | || |||||||| || | Sbjct 439795 CCACCTCGCAGACACAGCACCAGATGCAGGGTGGACTCTC--TCTGGATGTTGTAGTCAG 439738 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || |||||||| || ||||||||||||| ||||||||||| | | Sbjct 439737 AGACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGGCGCTGCTGGTCGGGTG 439678 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | || ||||||||| | | || ||| | | | | | ||||| || | || | Sbjct 439677 AGATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 439618 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 |||| | ||||| || || || |||| || |||| || ||||||| ||| |||| Sbjct 439617 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCA-TCTTTGCG 439562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 || |||||||| || | | || || | || |||||||| || |||||||||||||| Sbjct 439036 TGGATGTTGTATTCAGAGACAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAAG 438977 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC 35671 ||||||||||| | | | || ||||||||| | | || ||| | | | | | Sbjct 438976 CGCTGCTGGTCGGGTGAGATGCCCTCCTTGTCTTGGGTTTTGGCCTTGACATTCTCGATG 438917 Query 35672 GTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATC 35731 ||||| || | || ||||| | ||||| || || || |||| || |||| || ||| Sbjct 438916 GTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATGAAGATC 438857 Query 35732 TGCATTCTGTGCG 35744 |||| ||| |||| Sbjct 438856 TGCA-TCTTTGCG 438845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450507627810000