Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026584.1 Length=109871 Score E Sequences producing significant alignments: (Bits) Value seq38458 147 2e-30 >seq38458 Length=1404 Score = 147 bits (162), Expect = 2e-30 Identities = 207/290 (71%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 62938 ATGCCGATTAGGCCGGAGAACCGCAAGCGATACCCGCCCGATTGGCGTGAGATAAGCCAG 62997 ||||| || | |||||||||||| | || ||||| || |||| ||||| | Sbjct 868 ATGCCCATCCGCCCGGAGAACCGCGACCGCTACCCCAAGGACTGGCCCGAGATCTCGCGC 809 Query 62998 CGCATCAGATTTGTGCGCGCCGACGGACGCTGTGAATGCGAGGGCGAATGCGGACGTGGC 63057 |||||| | | || || | | || || || |||| ||| || || || | Sbjct 808 CGCATCCGGCTCGTCCGGTC--AATTACAGTGCGAGTGCGTCGGCTGGTGTGGCCGCAAC 751 Query 63058 ACCCATCGGGGGCGCTGCCCAAACCGGCACGGTGAGCCCGCCTACGGCACCGGTAGCCGC 63117 || || || || |||||| | || || || || | ||| |||||||| || || ||| Sbjct 750 ACACACCGAGGCCGCTGCTCCAATCGTCAAGGGCTACGCGCTTACGGCACTGGCAGTCGC 691 Query 63118 GTCGTTCTCACCACGGCGCATCTCAATCACATTCCCGAGGACTGCCGCGACGAGAACCTC 63177 ||||| || ||| ||||| || ||||||| |||||||||||||||||||||||||| Sbjct 690 GTCGTGCTGACCGTCGCGCACCTGAATCACACCCCCGAGGACTGCCGCGACGAGAACCTA 631 Query 63178 CGCGCAATGTGTCAGGGATGCCACTTGCATTACGACAAGGATCATCACGC 63227 ||||| ||||| ||||| |||||| |||| |||||| ||| || ||||| Sbjct 630 CGCGCGATGTGCCAGGGCTGCCACCTGCACTACGACCTGGAGCACCACGC 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351245015014000