Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026585.1 Length=60727 Score E Sequences producing significant alignments: (Bits) Value seq49917 787 0.0 seq50663 497 4e-136 seq38559 293 9e-75 seq43497 102 3e-17 >seq49917 Length=2087 Score = 787 bits (872), Expect = 0.0 Identities = 926/1250 (74%), Gaps = 7/1250 (1%) Strand=Plus/Plus Query 15173 CCCCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTGATCGTCGAGACC 15232 || || |||| |||||||||||||| || || ||||||| || | |||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15233 GCTGGTTTGCGGTACGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCA 15292 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15293 TGGACTGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAACTATTACGTGATTTGG 15352 ||||| |||| | || ||||||| || | |||||||| ||||| |||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15353 CCGTCGTGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCGCACGCGGTGTTCGTGTGGGCG 15412 ||| |||||||||| || || || ||||| | |||||||| | ||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15413 TTGCAAACCGTCGTTGAGAACATGGTCGCAGAGTGCGCTCTGCGGTTGCAGTCCGGGTGG 15472 | | ||| ||| |||||||||||||| || ||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15473 CTGGAGTTCATCAACAACGGCTTGTCGTT-----GAACCCGGATGTGCGGGCATGGTTCG 15527 ||||||||| ||||||||| | |||| | |||| || | ||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15528 GCACCGTGCTGCAAGCCCTGTCGCGTGATGGGCTGTCGGTGAAGGCGTTTACCCGCATGC 15587 ||||| | |||||||||| ||| || ||| |||||| || | || | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15588 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCGCTGTTGGACACGTCGCCGATGGTCG 15647 |||| ||||| |||||| |||||||| ||| | ||||||| ||||| ||| || Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15648 CGCGGACAGTGCGGATGGAAACCGTGCAGGCCG-TCATCAAGGACGTTACCCAGTCGTAC 15706 | ||| || || ||||||||| ||| | || |||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15707 GGTGTGGATACCCGTATGGATTTGTGGCTTCCGGGTGATCCGCAGCCTGACCGGTGGGCG 15766 |||||||| ||||| ||||| |||||| |||||||| ||||| || ||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 15767 AACCTTGACCAGCCTACCTACGTGTTCTCGACCGCGGACCGGTCGCAGATCACTGGCCCG 15826 ||||| || ||| ||||||||||| || ||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 15827 ACGAAAACCGTGCTGGATTCGGTGCTGCGCACCACGATTGACTTGGGCGGGTCGCTGGGG 15886 || |||||||| ||||||||| | || ||| ||| | ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 15887 GACATTTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCG 15946 ||||| ||||| || |||||| ||||||| ||||| ||| |||| ||||| || || || Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 15947 GCGCTGGGTGTGGATTTCGAGCAGCCGTACGCGTATTTCGTTGCGCCTGAGCCGGGTGAG 16006 ||| ||||| |||||||||||||| ||||| || |||| || || || ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 16007 GACACCGGTATCGATGCTTGCACGATCACTGACCACACACCGGAGGGTTGGCAGCACATC 16066 ||| || ||| ||| ||| | |||||||| || ||||| ||||| |||||| Sbjct 906 GACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACATC 965 Query 16067 ATTGGTGGCCGTTCCCCAAAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCTG 16126 || || |||||||| |||||||||||||||||| | |||||||||||||||||| || | Sbjct 966 ATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTGG 1025 Query 16127 ATCGACTCGCTGATGATTGTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16186 || | ||||||||||| || ||||| ||| ||||||| ||||| |||||||| ||||| Sbjct 1026 ATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGGA 1085 Query 16187 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGCGACGAA 16246 |||||||||||||||||||||||||||||| || | || ||| | ||||||||| Sbjct 1086 TTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGAG 1145 Query 16247 GTTGGGCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACTGCCTCAGCGCCGTACAAC 16306 || || || | ||||||||||||||||||||||| ||||| ||| || ||||||||| Sbjct 1146 GTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAAC 1205 Query 16307 ATCGAAACGGTGTTCGCGTTCATCAATGCTTTGTTTGATTCGCAGGGCAAGACGACGGCG 16366 |||||||| |||||||||||||||| || | || ||| | || || || |||||| Sbjct 1206 ATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGCG 1265 Query 16367 ACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGTCGTGACGTTTT 16416 ||| ||||| ||||||| ||| ||||| || || || ||| |||| Sbjct 1266 CAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 497 bits (550), Expect = 4e-136 Identities = 477/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15905 ATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCGGCGCTGGGTGTGGATTTC 15964 || ||||| | |||||||||||||| |||||||| |||||| || |||||| | ||| Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15965 GAGCAGCCGTACGCGTATTTCGTTGCGCCTGAGCCGGGTGAGGACACCGGTATCGATGCT 16024 ||||| || ||||| ||| | |||||||| || | ||||||||| | ||| | Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 16025 TGCACGATCACTGACCACACACCGGAGGGTTGGCAGCACATCATTGGTGGCCGTTCCCCA 16084 ||| |||||| |||| || || |||||||||||||||||||| ||||||||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 16085 AAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCTGATCGACTCGCTGATGATT 16144 ||||||||||||||| ||||||||||||| ||||| ||| ||||||| ||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16145 GTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 16204 || ||||| ||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16205 CTGGCGTTCCAGTTGATTCAACACTACGACCGCCGCGACGAAGTTGGGCCGTACCATCCG 16264 ||||| |||||| | | || ||||||||||| ||||||||||| || || ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16265 GCGATCGAGCGGTTCTATCCGACTGCCTCAGCGCCGTACAACATCGAAACGGTGTTCGCG 16324 ||| ||||||| |||||||| || || ||||| || |||||||||||||| || |||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16325 TTCATCAATGCTTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGTAAC 16384 |||||||| || | |||||||| |||||| | || || || || |||||| || Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16385 GGTGCCCAGTATGCGTTGGGTCGTGACGTTTTTCGCGGCGGTCTGATGTCGCTGGTGT-T 16443 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16444 CATGTCACGTACCCGCATGGTGACTGACTACATCGAGAACGTGATGTGGCGGGTTACCCA 16503 || | | || ||| ||||| || ||||||||||||||||| |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16504 GGATGAGCG 16512 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 170 bits (188), Expect = 7e-38 Identities = 202/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 15461 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCTTGTCGTTGAACCCGGATGTGCGGGCA 15520 ||||| |||||| |||| ||| |||||||| | ||||||||||| || | || ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15521 TGGTTCGGCACCGTGCTGCAAGCCCTGTCGCGTGATGGGCTGTCGGTGAAGGCGTTTACC 15580 |||||||||||| | |||||||||||| || ||||| |||||| | ||| | || | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15581 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCGCTGTTGGACACGTCGCCG 15640 |||||||| || || || |||||| || ||||| ||| | ||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15641 ATGGTCGCGCGGACAGTGCGGATGGAAACCGTGCAGGCCGTCATCAAGGACGTTACCCAG 15700 || || ||| || || ||||| ||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAGACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCGA 1133 Query 15701 TCGTACGGTGTGGATACCCGTATGGATTTGTGGC 15734 | |||||||| ||||||||||||||| |||||| Sbjct 1134 GCCTACGGTGTAGATACCCGTATGGATCTGTGGC 1167 Score = 141 bits (156), Expect = 4e-29 Identities = 234/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 15059 TGCGACAAATTCTGGCAGCCGATGGGATCGGTTGGTGGCGACCTGATCGAGGCGTCGGGC 15118 |||| ||| |||||| || ||||| | | || ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 15119 GCTGACCCGCGCAATGATGTGGAAACAGGGCGGATCGTACTCAAAGGGAACAGTCCCCTC 15178 | || || || ||||| || | |||||| | ||| || | || || ||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15179 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTGATCGTCGAGACCGCTGGT 15238 | | |||||||||||||| || |||||||| || | || |||||||| || Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15239 TTGCGGTACGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCATGGACT 15298 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15299 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAACTATTACGTGATTTGGCCGTCG 15358 || || | ||| || |||||| | ||||| ||||||||||||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15359 TGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCGCACGC 15396 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 293 bits (324), Expect = 9e-75 Identities = 288/369 (78%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16127 ATCGACTCGCTGATGATTGTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16186 ||||| |||||||||| || ||||| ||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16187 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGCGACGAA 16246 ||||||||||||||||||||||| |||||| | || || ||||||||||| ||||||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16247 GTTGGGCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACTGCCTCAGCGCCGTACAAC 16306 || || || ||||| || ||| ||||||| |||||||| || || ||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16307 ATCGAAACGGTGTTCGCGTTCATCAATGCTTTGTTTGATTCGCAGGGCAAGACGACGGCG 16366 |||||||| || |||||||||||||| || | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16367 ACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGTCGTGACGTTTTTCGCGGCGGT 16426 || |||||| || |||| ||| || || ||||| | |||||||| ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 16427 CTGATGTCGCTGGTGT-TCATGTCACGTACCCGCATGGTGACTGACTACATCGAGAACGT 16485 |||||||| | || | || | | || ||| ||||| || |||||| |||||||||| Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 16486 GATGTGGCG 16494 |||||||| Sbjct 748 CATGTGGCG 756 Score = 159 bits (176), Expect = 1e-34 Identities = 199/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15737 CCGGGTGATCCGCAGCCTGACCGGTGGGCGAACCTTGACCAGCCTACCTACGTGTTCTCG 15796 || |||||| |||||| || | |||| | ||| || || || || || || || ||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15797 ACCGCGGACCGGTCGCAGATCACTGGCCCGACGAAAACCGTGCTGGATTCGGTGCTGCGC 15856 || | ||||| || ||| ||||| || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15857 ACCACGATTGACTTGGGCGGGTCGCTGGGGGACATTTTCAAACCTGTCATCAAGCAGGTT 15916 || | ||| |||| || ||||| || | || ||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15917 CCCGGCATGGACGGCGTGTTTTATGCGCCGGCGCTGGGTGTGGATTTCGAGCAGCCGTAC 15976 |||||||||||||| ||||| || |||||| || |||||| | |||||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15977 GCGTATTTCGTTGCGCCTGAGCCGGGTGAGGAC 16009 || ||| | |||||||| || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq43497 Length=1050 Score = 102 bits (112), Expect = 3e-17 Identities = 204/299 (68%), Gaps = 20/299 (7%) Strand=Plus/Plus Query 17490 GTTTTCGGTTGAGGTTCTTCCGCTGTCATGACGTCTTCGTTTGATCCGTTGCCGGAGTGG 17549 ||||| || ||||||||| ||||||| ||| || | || || || ||| Sbjct 3 GTTTTGGGCTGAGGTTCTGCCGCTGT---GACATCGGGGATT---------CCCGAATGG 50 Query 17550 GCTCATGCGGTGCCGTCTGAGCCGGGTATTCACCCGGAGCAGTCGGCGTTGCAGTGGCAG 17609 || || ||| | ||||||| || | | || | ||||||| | | || || || Sbjct 51 GCGCAGGCGATCCCGTCTGCCCCAG---TCCATCAGGAGCAGCC--CAATGAGCTGACA- 104 Query 17610 CGGCCGTTCACTGTTCAGCAACTGCTTGAGATTGGTGAGCAGTTCATTGAGCAGTTTTTG 17669 ||||||||||| | ||||| || ||||| | ||||| ||| |||| |||||||| || Sbjct 105 CGGCCGTTCACGGCGCAGCAGCTCATTGAGTTCGGTGAACAGCTCATCGAGCAGTTCCTG 164 Query 17670 GCGTGGGTGGTGCGCGCTGTTGCTGGAGTGTTCATCCCTGGTGAGGCGTCGTTCGACCAG 17729 | | || || | || || | || |||||||| ||||| | |||||||| ||| Sbjct 165 CGGCGCGTAGTCCTGGCCGTGGTCGGCTCATTCATCCCCGGTGAAGGCTCGTTCGAGCAG 224 Query 17730 TTGCGTGATTGGGCATTGAACATCCCCATCCTCGGCGACATCATCAACCTGATCAACGA 17788 || || ||||||| | |||||||||| | ||| |||||| ||| | ||||| || Sbjct 225 CTGGAGGAATGGGCATACAGCATCCCCATCATAGGCCACATCACCAA--TCATCAAGGA 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194087761263500