Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026589.1 Length=55832 Score E Sequences producing significant alignments: (Bits) Value seq49917 212 2e-50 seq46163 197 5e-46 seq46136 129 2e-25 >seq49917 Length=2087 Score = 212 bits (234), Expect = 2e-50 Identities = 529/790 (67%), Gaps = 25/790 (3%) Strand=Plus/Plus Query 16045 CGGCATCTGGGACATCCTCAACTACCTGACGATCCTGCCGTCGTGGTTT-TTGCCGATAC 16103 |||||| ||||||||||| |||||| |||| |||| |||||| || || | | Sbjct 210 CGGCATTTGGGACATCCTGAACTACTACGTGATCTGGCCGACGTGGTGGCTTCCCCTTGC 269 Query 16104 AGCTGCAGCCGTTCTCACACGCGGTGTT--TGTGGGCCCGCTGGTGACGGTGATCGAAAA 16161 || ||||| | || ||||| | || | ||||| ||| ||| | || || Sbjct 270 CGCC-CAGCCCATTTCGCACGCAATCTTCATCTGGGC--GCTACCGACCTGCGTGGAGAA 326 Query 16162 CATGATCTCCGAGTGCGCGCTGAGGATCCAGGGCGGCATCCACGACTTCCTCAACAACGC 16221 |||| || |||| ||||||||| | |||||| ||| | || ||| |||||||||| Sbjct 327 CATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGGCTGGAGTTCGTCAACAACGC 386 Query 16222 GTTGTCGCT-----GAATCCCGATGTGCGCGCTTGGTTTGGGTCGATTCTGACCGCGATC 16276 |||| || ||| ||| | || || ||| | || | || || || || Sbjct 387 CCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGGGCACCATCTTGCAAGCCCTC 446 Query 16277 GAGCGCGACGGGCTCAACCCGCAGGCGCTGCTGGA-GATGCTCAAGACGCCCATGTACGT 16335 |||||||| |||| |||| | || | | | |||||| || |||| || || Sbjct 447 AAGCGCGACAAGCTCTCGGTGCAGAC-CTTCGGCAAGATGCTGCGCACCCCCACCTATGT 505 Query 16336 GGTGCGCACCAACCCGTTCTTCGACGGTTC-CCCATTGGCGGCCAAGACGGTTCGCATGG 16394 | |||||||||||||||| | ||| || ||||| || |||||||| |||||||||| Sbjct 506 GCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGC-GCCAAGACCGTTCGCATGG 564 Query 16395 AGTCGTGCGGCACAACGATCCGCGACCTGACCAAGGCGTACGGCGTCGACGTGCGGGTCG 16454 | | ||||| || ||| || | ||| || ||||| || ||| || | | Sbjct 565 AAACCTGCGGAACGGTCATCAAGGATGTCACCCGCGCCTACGGTGTGGACACCCGCATGG 624 Query 16455 ATCTGTGGCGGCCGGGGGATCCGCAGCCGGATCGGTGGGCCAACCTCACGAAACCGACGT 16514 | |||||||| ||||| || ||||| ||||| ||||||||||||| || || | Sbjct 625 ACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCCAACCTCGATTCGCCCACCT 684 Query 16515 ATGTGGTGACGGTCAAGGACCGCTCGCAGATCTCGGGGCCGACACACTCGATTCTCGATT 16574 | ||| | | | ||||||| ||||||||||||||| || | | || ||||| Sbjct 685 ACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCCACCAAAACCGTTGCCGATT 744 Query 16575 CGATCTTCCGCACGACCGTG---GATCTCGGTGGCTCACTCGGCGACATCTTTTGGCCGA 16631 || | | || ||| ||| || ||||| || |||||||| |||||||| ||| Sbjct 745 CGGTGAT---CAAGACGGTGATCGACCTCGGCGGATCACTCGGTGACATCTTCAAGCCAG 801 Query 16632 TCATCCGCCAGGT--CCAGTCGATGCCGGGCGTGTACGAGGCCCCCTCGCTGGGTGTGAA 16689 |||||| ||||| || || ||| || |||| | | |||||| ||| ||||| | Sbjct 802 TCATCCAGCAGGTACCCGGT--ATGAACGGGGTGTTCTACGCCCCCAAGCTCGGTGTCGA 859 Query 16690 CTTCACCGAACCGTACGCGATCGTCGTCGCGCCCGAGCCGGGCGAGGACTCGCCGCTGGT 16749 ||| | || ||||| ||||||||| ||||| |||||||||||| | | Sbjct 860 TTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAGGACTCCAACATCAT 919 Query 16750 GTCGTGCAAGATCACCGACCACACACCCAAGGCGTGGCAGATCATCATCGGGGGACGATC 16809 ||| | ||| |||||||||| ||| ||| ||||| ||||||||| || || || Sbjct 920 CAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACATCATCGGCGGCCGTTC 979 Query 16810 GCCCAAATGG 16819 || || ||| Sbjct 980 TCCAAAGTGG 989 >seq46163 Length=1271 Score = 197 bits (218), Expect = 5e-46 Identities = 202/261 (77%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 22675 CAACAGGGAGAACCCTACATGTCTGAATATCAAGCCGCACACCGACGGGCATGCGCCTCG 22734 |||||| || ||| |||||| ||||| ||||| | |||||||| || ||| | | Sbjct 209 CAACAGAAAGGCCCCCGCATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCTGCGCC 268 Query 22735 GCAATCACCGCACTCGGCAACCGAATTGGGCTCTACGCCGGTTCGACCCGCGTCGGCACC 22794 |||||||||||||||||||||||||| ||||| | ||||||||| ||||| || |||||| Sbjct 269 GCAATCACCGCACTCGGCAACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAGGCACC 328 Query 22795 GTGTTCGCCGACACCACCTGGGGTACAGCCGCCGACATCACCGAGGGCGGCATCGACAAG 22854 | | ||||||||||||||||| || | | ||| ||||||| ||||||||||||| Sbjct 329 GCCTACGCCGACACCACCTGGGCCACCCCAGTCGATGTCACCGAATCCGGCATCGACAAG 388 Query 22855 GC-TCAGGTGACCGGCTCGACAGTCACAATCACGATTCCGGGCGGCACCGTATCGAACGG 22913 || ||| ||||||||| || || ||| || | || ||||||||||| | ||||| Sbjct 389 GCATCA-TCCACCGGCTCGCTGGTAACCATCTCGGTACCTGGCGGCACCGTGGCCAACGG 447 Query 22914 TACGGCCATCGACCGATACGG 22934 |||| ||| |||| ||||| Sbjct 448 CACGGTGATCAACCGGTACGG 468 >seq46136 Length=4795 Score = 129 bits (142), Expect = 2e-25 Identities = 262/380 (69%), Gaps = 17/380 (4%) Strand=Plus/Minus Query 9760 CCCGGCCAGATCAACACGACCTGGCAGGTGATGGCCAAGCAGCTGGAGGATCGGCGCCGA 9819 ||||| |||||| | ||| |||| |||||||| ||||||||||| ||| | | Sbjct 2726 CCCGGTCAGATCGATACGCACTGGAAGGTGATGCAGCGCCAGCTGGAGGAGCGGA-CAAA 2668 Query 9820 GC-CGACTCGAAAAGTTCTTGAGGCGGTAGCGCTGTGGTGCCGCTACCCCGATCAGCTTG 9878 | |||||| |||||| ||||||| ||||||||||||||||| | ||| || | | | Sbjct 2667 GATCGACTCCAAAAGTAATTGAGGCAGTAGCGCTGTGGTGCCGTTGGCCCAATGCGATCG 2608 Query 9879 AATCCGACCTCAAGATTCATTGCTATGGCACGGATATTCGTTGGT-GGCACCGCGGCGAC 9937 | |||| || ||| | | || || || || || | |||||| ||| | Sbjct 2607 AGGCCGATCTTCGTTTTCGCGG-TGTG---CGCAT---CGCTGATTGGCACCAGGGCACC 2555 Query 9938 CGTGACGAGCACGGCTGCCTGAAACTGTCGAGTCGATTGCTGCTCAACCTGGTTCGCGGG 9997 || || |||| |||| |||| || || || || || || ||| | | | | Sbjct 2554 CGCGATGAGCGCGGCGCCCTGGTGCTTTCCAGCCGCCAACTACTGTCGCTGATCCACCAG 2495 Query 9998 CTGCCCGAAGAGTCCGAATTCAAGACTCA--CGCCGCTGAGCCGTTCGGCCGCGACGGCG 10055 ||||||||||| || || ||||| || || |||||| | ||||| ||| | ||||| Sbjct 2494 CTGCCCGAAGACTCAGAGTTCAAAACCCAAGCGCCGCCG--CCGTTTGGC---GCCGGCG 2440 Query 10056 ACTGGTCAATCCTCAAGAAGATGACCGCGGCCCTGCATAACGAGGTCGCGGCATATCGCG 10115 |||| | || | ||||||| | ||| | || |||||| |||||||||| || | Sbjct 2439 GCTGGACGGTCATGCAGAAGATCATCGCCGAGACACACAACGAGCTCGCGGCATACCGGG 2380 Query 10116 CCAGCAAGTACGCCGGCACC 10135 ||||||||||||| |||||| Sbjct 2379 CCAGCAAGTACGCGGGCACC 2360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 178433201271000