Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026593.1 Length=59419 Score E Sequences producing significant alignments: (Bits) Value seq49917 836 0.0 seq50663 470 6e-128 seq38559 284 5e-72 seq45035 111 6e-20 >seq49917 Length=2087 Score = 836 bits (926), Expect = 0.0 Identities = 937/1246 (75%), Gaps = 9/1246 (1%) Strand=Plus/Plus Query 15447 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACA 15506 || || |||| |||||||||||||| || || ||||||| ||| | ||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15507 GCCGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCA 15566 ||||| || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15567 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGG 15626 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15627 CCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 15686 ||| |||||||||| || || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15687 CTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15746 || | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15747 CTGGAGTTCATCAACAACGGACTGTCGTTAAACC---CGG--ATATCCGGGCATGGTTCG 15801 ||||||||| ||||||||| ||||| | || ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15802 GCACCGTTCTGCAAGCCCTGTCGCGGGACGGGCTGTCGGTCCAGGCGTTCACCCGCATGC 15861 ||||| | |||||||||| ||| ||| ||| ||||| ||| | ||| | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15862 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCGATGGTCG 15921 |||| ||||| |||||| |||||||| ||||| ||||||| ||||| ||| || Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15922 CGCGGACAGTGCGGATGGAAACCGTTCAG-GCCGTCATCAAGGACGTTACCCAGTCGTAC 15980 | ||| || || ||||||||| | | | | ||||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15981 GGTGTGGATACTCGCATGGATTTGTGGCTGCCGGGTGATCCGCAGCCTGACCGGTGGGCG 16040 |||||||| || |||||||| |||||| |||||||| ||||| || ||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 16041 AACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGCCCG 16100 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 16101 ACGAAAACCGTGCTGGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGGG 16160 || |||||||| ||||||||| | || ||| ||||| ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 16161 GACATCTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGATGGCGTGTTTTATGCGCCC 16220 ||||||||||| || |||||| ||||||| ||||| ||| | || ||||| || || ||| Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 16221 GCGTTGGGTGTGGATTTTGAGCAGCCGTACGCGTATTTCGTGGCGCCTGAGCCGGGTGAG 16280 | | ||||| ||||| |||||||| ||||| || |||| || || || ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 16281 GACACCGGCATCGATGCA-TGCACGATCACTGACCACACCCCCGAGGGTTGGCAGCACAT 16339 ||| || |||| || | ||| ||| | ||||||||||||||||| ||||| ||||| Sbjct 906 GACTCCAACATC-ATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACAT 964 Query 16340 CATTGGTGGGCGTTCCCCAAAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCT 16399 ||| || || ||||| |||||||||||||||||| | |||||||||||||||||| || Sbjct 965 CATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTG 1024 Query 16400 TATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGG 16459 || | |||||||||||||| ||||| ||| ||||||| ||||| |||||||| ||||| Sbjct 1025 GATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGG 1084 Query 16460 GTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGA 16519 |||||||||||||||||||||||||||||| || | || ||| | ||| ||||| Sbjct 1085 ATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGA 1144 Query 16520 AGTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 16579 || ||||| | ||||||||||||||||||||||| ||||| ||| || |||||||| Sbjct 1145 GGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAA 1204 Query 16580 CATCGAGACAGTCTTTGCATTCATCAACGCTTTGTTTGATTCGCAGGGTAAGACGACGGC 16639 |||||| || | || || ||||||||||| | || ||| | || ||| || ||||| Sbjct 1205 CATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGC 1264 Query 16640 GACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGGCGTGAC 16685 | ||| ||||||||||||| ||| ||||| || || || ||| Sbjct 1265 GCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGAC 1310 >seq50663 Length=1982 Score = 470 bits (520), Expect = 6e-128 Identities = 471/609 (77%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 16179 ATCAAGCAGGTTCCCGGCATGGATGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTT 16238 || ||||| | ||||||||||| || |||||||| ||||| | |||||| | || Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 16239 GAGCAGCCGTACGCGTATTTCGTGGCGCCTGAGCCGGGTGAGGACACCGGCATCGATGCA 16298 ||||| || ||||| ||| | || ||||| || | ||||||||| | |||| | Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 16299 TGCACGATCACTGACCACACCCCCGAGGGTTGGCAGCACATCATTGGTGGGCGTTCCCCA 16358 ||| |||||| |||| |||||||||||||||||||||||||| ||||| ||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 16359 AAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCTTATCGACTCGCTGATGATC 16418 ||||||||||||||| ||||||||||||| ||||| ||| | ||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16419 GTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 16478 || ||||| ||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16479 CTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 16538 ||||| |||||| | | || ||||||||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16539 GCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAACATCGAGACAGTCTTTGCA 16598 ||| ||||||| |||||||| || || ||||| || ||||||||||| ||||| || || Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16599 TTCATCAACGCTTTGTTTGATTCGCAGGGTAAGACGACGGCGACGGTGCAGTTCCGCAAC 16658 ||||||||||| | |||||||| ||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16659 GGTGCCCAGTATGCGTTGGGGCGTGACGTGTTTCGTGGCGGCCTGATGTCGTTGGTGT-T 16717 |||| ||| || || ||||| | ||||| || ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16718 CATGTCTCGTACCCGCATGGTGACTGACTACATCGAGAATGTGATGTGGCGGGTTACCCA 16777 || | | || ||| ||||| || |||||||||||||| || |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16778 GGATGAGCG 16786 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 179 bits (198), Expect = 1e-40 Identities = 210/284 (74%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 15735 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGACTGTCGTTAAACCCGGATATCCGGGCA 15794 ||||| |||||| |||| ||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15795 TGGTTCGGCACCGTTCTGCAAGCCCTGTCGCGGGACGGGCTGTCGGTCCAGGCGTTCACC 15854 |||||||||||| | |||||||||||| || || || |||||| | || | ||| | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15855 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCG 15914 |||||||| || || || |||||| || ||||| ||||| ||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15915 ATGGTCGCGCGGACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCAG 15974 || || ||| || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAGACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCGA 1133 Query 15975 TCGTACGGTGTGGATACTCGCATGGATTTGTGGCTGCCGGGTGA 16018 | |||||||| ||||| || |||||| |||||| ||| || || Sbjct 1134 GCCTACGGTGTAGATACCCGTATGGATCTGTGGCGGCCCGGGGA 1177 Score = 141 bits (156), Expect = 4e-29 Identities = 234/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 15333 TGCGACAAGTTTTGGCAGCCGATGGGCGCTGTCGGTGGCGACCTGATCGAGGCGTCGGGT 15392 |||| |||||| ||| || ||||| |||| ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 15393 GCTGACCCGCGCAACGATGTTGAAACCGGCCGGATCGTCCTCAAAGGGAACAGCCCTCTC 15452 | || || || || || |||| ||||||| | ||| || | ||||||||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15453 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACAGCCGGT 15512 | | |||||||||||||| || |||||||| || | || ||||| || || Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15513 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCATGGACC 15572 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15573 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGGCCGTCG 15632 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15633 TGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGC 15670 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 284 bits (314), Expect = 5e-72 Identities = 286/369 (78%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16401 ATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16460 ||||| ||||||||||||| ||||| ||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16461 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGAA 16520 ||||||||||||||||||||||| |||||| | || || ||||||||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16521 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAAC 16580 || ||||| ||||| || ||| ||||||| |||||||| || || ||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16581 ATCGAGACAGTCTTTGCATTCATCAACGCTTTGTTTGATTCGCAGGGTAAGACGACGGCG 16640 ||||| ||||| || || ||||||||||| | |||||||| ||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16641 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGGCGTGACGTGTTTCGTGGCGGC 16700 || ||||||||| |||| ||| || || ||||| | ||||| || ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 16701 CTGATGTCGTTGGTGT-TCATGTCTCGTACCCGCATGGTGACTGACTACATCGAGAATGT 16759 |||||||| | || | || | | || ||| ||||| || |||||| ||||||| || Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 16760 GATGTGGCG 16768 |||||||| Sbjct 748 CATGTGGCG 756 Score = 145 bits (160), Expect = 3e-30 Identities = 196/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16011 CCGGGTGATCCGCAGCCTGACCGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 16070 || |||||| |||||| || | |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 16071 ACAGTGGACCGGTCGCAGATCACTGGCCCGACGAAAACCGTGCTGGATTCGGTGCTGCGC 16130 || || ||||| || ||| ||||| || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 16131 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 16190 || | ||||| || || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 16191 CCCGGCATGGATGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTTGAGCAGCCGTAC 16250 ||||||||||| || ||||| || ||||| | |||||| | || ||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 16251 GCGTATTTCGTGGCGCCTGAGCCGGGTGAGGAC 16283 || ||| | || ||||| || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq45035 Length=256 Score = 111 bits (122), Expect = 6e-20 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 14700 TATGACGGTCCCGGCGCGGATGAGTATGTGGAGTTTGGGCCGCTGCTGCCCAATCAGATT 14759 || ||||| |||||| |||| | ||||| || || ||||||||||| ||||||||| | Sbjct 59 TACGACGGGCCCGGCTCGGACCAATATGTCGAATTCGGGCCGCTGCTACCCAATCAGGTG 118 Query 14760 GTGTTCCTACGTACCGACCCGCGCTCACAGACGACGTTGGTGCAGGATTTGACGTCGGTG 14819 ||||| | || ||||| |||||| || || || |||||| | || | || |||||| Sbjct 119 GTGTTTTTGCGCACCGATCCGCGCGTGCACACCACCTTGGTGAAAGACCTAACCTCGGTG 178 Query 14820 CCGCCGTCGCCGCAGGAGTTGAACATTTTCCAGCAGGCG 14858 ||||| || |||||||| | | | |||||| ||||| Sbjct 179 CCGCCCTCACCGCAGGAACTCGATTTGTTCCAGGAGGCG 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189904683741500