Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026596.1 Length=57052 Score E Sequences producing significant alignments: (Bits) Value seq49917 868 0.0 seq50663 500 3e-137 seq38559 307 4e-79 seq42881 120 1e-22 >seq49917 Length=2087 Score = 868 bits (962), Expect = 0.0 Identities = 945/1250 (76%), Gaps = 7/1250 (1%) Strand=Plus/Plus Query 15189 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAAACC 15248 || || |||| |||||||||||||| || || ||||||| ||| | || ||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15249 GCGGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCA 15308 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15309 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGG 15368 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15369 CCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 15428 ||| |||||||||| || || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15429 CTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15488 || | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15489 CTGGAGTTCATCAACAACGGCCTGTCGTTAAACC---CGG--ATATCCGGGCATGGTTCG 15543 ||||||||| ||||||||| |||||| | || ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15544 GCACCGTTCTGCAAGCACTGTCGCGTGACGGGCTGTCGGTCCAGGCGTTCACCCGCATGC 15603 ||||| | ||||||| || ||| ||| ||| ||||| ||| | ||| | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15604 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCGATGGTGG 15663 |||| ||||| |||||| |||||||| || | |||||||| ||||| ||| | Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15664 CTCGCACAGTGCGGATGGAAACCGTTCAGGCCG-TCATCAAGGACGTTACCCAGTCGTAC 15722 | || || || ||||||||| | | | || |||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15723 GGTGTGGATACCCGCATGGATTTGTGGCTTCCAGGTGATCCGCAGCCTGACAGGTGGGCG 15782 |||||||| ||||||||||| |||||| || ||||| ||||| || |||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 15783 AACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGTCCG 15842 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 15843 ACGAAAACCGTGCTCGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGGG 15902 || |||||||| |||||||||| | || ||| ||||| ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 15903 GACATCTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCC 15962 ||||||||||| || |||||| ||||||| ||||| ||| |||| ||||| || || ||| Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 15963 GCGTTGGGTGTGGATTTCGAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAG 16022 | | ||||| |||||||||||||| |||||||| |||| |||||||| ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 16023 GACACCGGTATCGATGCGTGCACGATCACTGACCACACCCCCGAGGGTTGGCAGCACATC 16082 ||| || ||| ||| ||| | ||||||||||||||||| ||||| |||||| Sbjct 906 GACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACATC 965 Query 16083 ATTGGTGGGCGTTCCCCAAAGTGGTTGAACGACCTCATGAATGCCACCTTCGCATGGCTG 16142 || || || ||||| |||||||||||||||||| | |||||||||||||||||| || | Sbjct 966 ATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTGG 1025 Query 16143 ATCGACTCGCTGATGATCGTCGTCGGGTTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16202 || | |||||||||||||| ||||||||| ||||||| ||||| |||||||| ||||| Sbjct 1026 ATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGGA 1085 Query 16203 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 16262 |||||||||||||||||||||||||||||| || | ||| ||| | ||| ||||| Sbjct 1086 TTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGAG 1145 Query 16263 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAAC 16322 || ||||| | ||||||||||||||||||||||| ||||| ||| || ||||||||| Sbjct 1146 GTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAAC 1205 Query 16323 ATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCG 16382 |||||||| ||||||| ||||||||||| | || ||| | || || || |||||| Sbjct 1206 ATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGCG 1265 Query 16383 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTT 16432 ||| ||||||||||||| ||| ||||| || || || ||| |||| Sbjct 1266 CAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 500 bits (554), Expect = 3e-137 Identities = 478/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15921 ATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTC 15980 || ||||| | |||||||||||||| |||||||| ||||| | |||||| | ||| Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15981 GAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAGGACACCGGTATCGATGCG 16040 ||||| || ||||||||| | || || || || | ||||||||| | ||| || Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 16041 TGCACGATCACTGACCACACCCCCGAGGGTTGGCAGCACATCATTGGTGGGCGTTCCCCA 16100 ||| |||||| |||| |||||||||||||||||||||||||| ||||| ||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 16101 AAGTGGTTGAACGACCTCATGAATGCCACCTTCGCATGGCTGATCGACTCGCTGATGATC 16160 ||||||||||||||| | ||||||||||| ||||| ||| ||||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16161 GTCGTCGGGTTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 16220 || ||||||||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16221 CTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 16280 ||||| |||||| | | ||||| |||||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16281 GCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAACATCGAAACGGTGTTCGCA 16340 ||| ||||||| |||||||| || || ||||| || |||||||||||||| || ||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16341 TTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGCAAC 16400 |||||||||||| | |||||||| |||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16401 GGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 16459 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16460 CATGTCACGTACCCGAATGGTGACTGACTACATCGAGAATGTGATGTGGCGGGTTACCCA 16519 || | | || ||| ||||| || |||||||||||||| || |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16520 GGATGAGCG 16528 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 168 bits (186), Expect = 2e-37 Identities = 204/275 (74%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 15477 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCCTGTCGTTAAACCCGGATATCCGGGCA 15536 ||||| |||||| |||| ||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15537 TGGTTCGGCACCGTTCTGCAAGCACTGTCGCGTGACGGGCTGTCGGTCCAGGCGTTCACC 15596 |||||||||||| | |||||||| ||| || || || |||||| | || | ||| | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15597 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCG 15656 |||||||| || || || |||||| || ||||| || | |||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15657 ATG-GTGGCTCGCACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCA 15715 || ||| | | || || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAG-ACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCG 1132 Query 15716 GTCGTACGGTGTGGATACCCGCATGGATTTGTGGC 15750 | |||||||| |||||||| |||||| |||||| Sbjct 1133 AGCCTACGGTGTAGATACCCGTATGGATCTGTGGC 1167 Score = 145 bits (160), Expect = 3e-30 Identities = 235/338 (70%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 15075 TGCGACAAGTTTTGGCAGCCGATGGGCGCTGTCGGTGGCGACCTGATCGAGGCGTCGGGT 15134 |||| |||||| ||| || ||||| |||| ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 15135 GCTGACCCGCGCAACGATGTTGAAACCGGCCGGATCGTCCTCAAAGGGAACAGCCCTCTC 15194 | || || || || || |||| ||||||| | ||| || | ||||||||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15195 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAAACCGCGGGT 15254 | | |||||||||||||| || |||||||| || | || || |||||||| Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15255 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCATGGACC 15314 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15315 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGGCCGTCG 15374 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15375 TGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGC 15412 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 307 bits (340), Expect = 4e-79 Identities = 291/369 (79%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16143 ATCGACTCGCTGATGATCGTCGTCGGGTTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16202 ||||| ||||||||||||| ||||||||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16203 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 16262 ||||||||||||||||||||||| |||||| | || ||||| |||||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16263 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAAC 16322 || ||||| ||||| || ||| ||||||| |||||||| || || ||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16323 ATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCG 16382 |||||||| || ||||| |||||||||||| | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16383 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGC 16442 || ||||||||| |||| ||| || || ||||| | |||||||| ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 16443 CTGATGTCGCTGGTGT-TCATGTCACGTACCCGAATGGTGACTGACTACATCGAGAATGT 16501 |||||||| | || | || | | || ||| ||||| || |||||| ||||||| || Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 16502 GATGTGGCG 16510 |||||||| Sbjct 748 CATGTGGCG 756 Score = 145 bits (160), Expect = 3e-30 Identities = 196/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15753 CCAGGTGATCCGCAGCCTGACAGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 15812 || |||||| |||||| || |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15813 ACAGTGGACCGGTCGCAGATCACTGGTCCGACGAAAACCGTGCTCGATTCGGTGCTGCGC 15872 || || ||||| || ||| || || || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15873 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 15932 || | ||||| || || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15933 CCCGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTCGAGCAGCCATAC 15992 |||||||||||||| ||||| || ||||| | |||||| | |||||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15993 GCCTATTTCGTGGCCCCCGAGCCGGGTGAGGAC 16025 |||||| | || || || || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq42881 Length=1721 Score = 120 bits (132), Expect = 1e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 11596 TGGGGCAGATCGGCGCCAAGCTTGATCAGGATTTCGGTATCTCGAAGGGTTTGGCGGGGA 11655 ||||| |||| ||||||||||| ||| || ||||| ||| ||||| | | || Sbjct 1488 TGGGGGAGATTGGCGCCAAGCTGGATGCCGACTTCGGCGCCTCCAAGGGCCTCGGTGGAC 1547 Query 11656 TTGCGGAGAACATCACGAAGTTCGTGGCGAACCTTGCCGCCGCACCGTTGTTGGGGCAGT 11715 |||| ||||| | ||||||||||| ||||| || || ||| ||| || | |||||| Sbjct 1548 TTGCCGAGAATCTAACGAAGTTCGTCGCGAATCTCGCGTTCGCGCCGATGCTTGGGCAGC 1607 Query 11716 TGCAG-GCCATTTCGGCCTATAACCCGACCCAGGGCGGGCACGGGTTGATGGGTGTCCTT 11774 | ||| || || ||| ||||| || ||||||| ||||| ||||||| |||| Sbjct 1608 T-CAGCGCTATAAGCGCCGCCAACCCCTCCAAGGGCGGATACGGGATGATGGGCATCCTC 1666 Query 11775 GGGGCGCAGGGAGTGTTCGGCCCGCAGT 11802 ||||||||||| || ||||| ||||||| Sbjct 1667 GGGGCGCAGGGTGTATTCGGGCCGCAGT 1694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182334848501000