Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_026597.1 Length=63334 Score E Sequences producing significant alignments: (Bits) Value seq39761 232 3e-56 seq46163 143 1e-29 >seq39761 Length=1115 Score = 232 bits (256), Expect = 3e-56 Identities = 390/553 (71%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 40586 GCCGTCAGCCAGGCGACAGCGATCGAGCAACAGCGCGCGATCGCCGAAGTTCAGGCGGCC 40645 || ||||||||||| || | |||| || || || ||||||| || || | ||| Sbjct 221 GCAGTCAGCCAGGCCACCTCAGTCGAACAGTCCCGTGCCGTCGCCGAGGTCCAATCCGCC 280 Query 40646 GTCGTCGTGGCCCAGAACTGCCCGCGAGATATGGCCGAGGCCGA-GCGTGAAATG-GAG- 40702 ||| ||||||||||| | |||||| || ||| |||||| ||| || ||| | | Sbjct 281 GTCATCGTGGCCCAGCAGATCCCGCGCGACATGCAGCGGGCCGAAGCG-GAGATGCGCGA 339 Query 40703 TACGTGTGCGGCCGTCTCGACATGGCCGAGCAAGCGTTCTATCAGGTGACCAACCGCGGC 40762 |||||| | || || ||||| | || || ||||| || ||| | ||||| ||| Sbjct 340 TACGTG--CAATCGATCCGCGATGGCGAAACAGGCCTTCTACCAAGTGCCGAACCGAGGC 397 Query 40763 ACCGGACCCACCGTGCACCTGATGCGCGAGCTGGCCAGGATCTGGGGCAACGTCGACCAC 40822 | ||| | | |||||||| |||||||| || || | ||||||||||||| | || Sbjct 398 AACGGCGCATCGGTGCACCTCATGCGCGAACTCGCGCGAGTCTGGGGCAACGTGCAGTAC 457 Query 40823 GGCGTCAAGGAACTGCACCGCAACGACGCAGCGGGGGTGTCCGAGGTCCAGGCGTTCGCG 40882 |||||||| || ||||||||| ||||| | ||| | |||||||| ||||||| ||| Sbjct 458 GGCGTCAACGAGCTGCACCGCGACGACTCCCGGGGCGAATCCGAGGTTCAGGCGTGGGCG 517 Query 40883 TGGGACATCCAGAAGAACACCCGTTCATCGCGCACCTTCATCGTGCCGCACCAGCGCATG 40942 ||||| | |||| |||||||| || |||||||||||||||| || || |||||| Sbjct 518 TGGGATGTGCAGACCAACACCCGCTCTACGCGCACCTTCATCGTCCCCCATGCCCGCATG 577 Query 40943 GTCAAGGGCCAGCGCAAGGATCTCGTTGACCTGCAGGACATTTACCTAAATAACCAGAAC 41002 ||||| | ||| | || ||| ||||| ||||| | || ||| | ||| Sbjct 578 TCAAAGGGGCGCCGCCAAGAACTCACCGACCTCGGTGACAT---CACGAACAACAACAAC 634 Query 41003 A--TCGG-TGCCCGCGCGGTCCGTGAGTGCATCGGAACG--ATTTTGCCGCGGTGGTTCA 41057 | ||| || ||||| ||||||||||||||| |||| || ||||| |||||||| Sbjct 635 AATGCGGCCGCTCGCGCTGTCCGTGAGTGCATC--AACGCCATCTTGCCCAAGTGGTTCA 692 Query 41058 CCGAGAAGGCGCAGAACGTGTGCCACGAAACTCTGAAGCACGGCGAAGGCAAGCCGTTGC 41117 |||| ||| ||| || | ||| | | || ||| || ||||||| ||| ||| |||| Sbjct 693 CCGAAGCGGCACAGGACATCTGCAAGGCCACGCTGGAGAACGGCGAGGGCGTGCCCTTGC 752 Query 41118 GCGACCGGATCGA 41130 | | || ||||| Sbjct 753 CCAAGCGCATCGA 765 >seq46163 Length=1271 Score = 143 bits (158), Expect = 1e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 23532 ATGTCTGAATATCAGGCCGCCCATCGACGCGCGTGCGCCGAGGCGATCACCGCGCTTGGC 23591 ||||| ||||| || || | || |||||||| ||| || || |||||||| || ||| Sbjct 227 ATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCTGCGCCGCAATCACCGCACTCGGC 286 Query 23592 AACAGGATCGGGCTCTACGCCGGTTCGACGCGCGTCGGCACCGTATCAGCGGACACTACC 23651 ||| | |||||||| | ||||||||| || || || ||||||| | || ||||| ||| Sbjct 287 AACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAGGCACCGCCTACGCCGACACCACC 346 Query 23652 TGGGGTGCAGCCGCCGACATCACCGAGGGCGGCATCGACAAGGCTCAAGTTACCGGATCG 23711 |||| | | | ||| ||||||| ||||||||||||||| | ||||| ||| Sbjct 347 TGGGCCACCCCAGTCGATGTCACCGAATCCGGCATCGACAAGGCATCATCCACCGGCTCG 406 Query 23712 ACAGTCACAATCACGATTCCAGGCGGCACCGTATCGAACGGTACGGCCATCGACCGATAC 23771 || || ||| || | || ||||||||||| | ||||| |||| ||| |||| ||| Sbjct 407 CTGGTAACCATCTCGGTACCTGGCGGCACCGTGGCCAACGGCACGGTGATCAACCGGTAC 466 Query 23772 GG 23773 || Sbjct 467 GG 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202418723371250