Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq39882 109 8e-19 >seq39882 Length=1284669 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| || ||||| || | ||||| || || ||||| || ||| || | ||| | | Sbjct 1021559 AGATCATCGACGGAGAGCTGTACCCACCCACAGTCAAAGATACCCAGGTAGAGATGATCT 1021618 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115 || || ||| ||||| | | || || || |||| | ||| | || || || | Sbjct 1021619 ACCCGCCTCACGTCCCCGAGCACCTGCGGTTTGCTGTGGGACAGGAGGTCTTCGGTCTGG 1021678 Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175 |||||||| | ||| |||| |||| ||||||||| | || || ||| |||| ||||||| Sbjct 1021679 TGCCCGGTCTGATGATGTATGCCACCATCTGGCTGCGGGAACATAACCGGGTGTGCGACG 1021738 Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||| || || || ||||| || ||| |||| || | ||||||||| Sbjct 1021739 TGCTTAAGCAGGAACACCCAGAGTGGGACGATGAGCGTTTGTTCCAGA 1021786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722881930680000