Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq48864 179 3e-40 seq489 116 3e-21 seq388 113 4e-20 seq40404 109 4e-19 seq75 109 4e-19 seq199 91.5 1e-13 >seq48864 Length=438413 Score = 179 bits (198), Expect = 3e-40 Identities = 503/762 (66%), Gaps = 19/762 (2%) Strand=Plus/Minus Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895 |||| ||||| ||| |||| || |||| || | || || || || |||||||| Sbjct 420478 ATTTCATATCCCATGTTCTGGCTTTCTTTGTAGCATGTGATGGCATCGTAAATGAAAACC 420419 Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| ||||||||| | ||||| |||||| || ||||| ||||| || Sbjct 420418 TGGTGGAGCGATTTAGCCAAGAAGTTGACATTAC-AGAAGCCCGCTGTTTGTATGGCTTC 420360 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||||||||| ||||| || | ||| |||||||| ||| | || || || || ||||| Sbjct 420359 CAAATTGCCATGGAAAACATACCTTCTGAAATGTATAGTTTCCTTATTGACACTTACATT 420300 Query 44015 AAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAA 44074 |||||| | || | | | | || | ||| || ||||| | ||| | || Sbjct 420299 AAAGATTCCAAAGAAAGGGAATTTCTCTTCAGTGCCATTGAAACCATGCCTTGTGTCAAG 420240 Query 44075 CATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAAATGA---TTCTTTTGGAGAACG 44130 | | ||||| |||||| | |||| | |||| || | | | ||||||||| Sbjct 420239 AAGGAGGCAGATTGGGCCTTGCGTTGGATTGGGGACAAAGGAGGCTACCTATGGAGAACG 420180 Query 44131 ACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATT 44190 ||| || ||||||| || ||||| || |||||| | || |||||||| ||||| Sbjct 420179 TTGTGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTACTGGCTCGTTTGCATAGATATT 420120 Query 44191 TTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCG 44250 ||| | ||| ||||| | |||||||||| | || ||||| ||||| | || || | Sbjct 420119 CTGGCTCAAGGAACGAAGACTGATGCCTGGTCTCACATTTTCCAATGAACTGATTAGCAG 420060 Query 44251 TGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAA 44310 ||||| | ||||| || || |||| | | || | | | || | || || Sbjct 420059 AGATGAGAGTTTACACTGTAATGTTGCCTACCTGATGTTCAAACGCCTGCTACACTAT-- 420002 Query 44311 GCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGA-TAGAACAAGAAT 44369 || | | ||| | | | ||| || || | | || || |||| | ||||| || | Sbjct 420001 -CCGTTAGAGCAGAGAGTGAAAGAAATCATTATCAATGCTGTCAAGAGTGGAACAGGAGT 419943 Query 44370 TTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAA 44428 | | ||| || || ||||| || | || | ||||| || | |||||||| || Sbjct 419942 TCCTCACAGAGGCTTTGCCTGTGAAGCTCATTGAGATGAACTG--CGCTTGATGAAGCAG 419885 Query 44429 TATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGG---TTGCGATAAACACTAT 44485 || ||||| | |||| || | | | |||||||||| | ||| | | Sbjct 419884 TACATTGAGTTTGTTGCCAATAGACTTATGCTGGAACTGGGATTTAGCG---AGGTTTTC 419828 Query 44486 ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTT 44545 | ||| ||| || ||||| |||||||| ||||||| ||||||| || || ||||| Sbjct 419827 AGAGTAGGAAATCCATTTGACTTTATGGAGAATATTTTACTGGAAGGAAAGACTAACTTC 419768 Query 44546 TTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||||| || | || || || |||||| | ||||| || ||| Sbjct 419767 TTTGAGAAGAGAGTAGGTGAGTATCAGAGGATGGGAGTTATG 419726 Score = 174 bits (192), Expect = 1e-38 Identities = 502/762 (66%), Gaps = 19/762 (2%) Strand=Plus/Minus Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895 |||| ||||| ||| |||| || |||| || | || || || || |||||||| Sbjct 415555 ATTTCATATCCCATGTTCTGGCTTTCTTTGTAGCATGTGATGGCATCGTAAATGAAAACC 415496 Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| ||||||||| | ||||| |||||| || ||||| ||||| || Sbjct 415495 TGGTGGAGCGATTTAGCCAAGAAGTTGACATTAC-AGAAGCCCGCTGTTTGTATGGCTTC 415437 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||||||||| ||||| || | ||| |||||||| ||| | || || || || ||||| Sbjct 415436 CAAATTGCCATGGAAAACATACCTTCTGAAATGTATAGTTTCCTTATTGACACTTACATT 415377 Query 44015 AAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAA 44074 |||||| | || | | | | || | ||| || ||||| | ||| | || Sbjct 415376 AAAGATTCCAAAGAAAGGGAATTTCTCTTCAGTGCCATTGAAACCATGCCTTGTGTCAAG 415317 Query 44075 CATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAAATGA---TTCTTTTGGAGAACG 44130 | | ||||| |||||| | |||| | |||| || | | | ||||||||| Sbjct 415316 AAGGAGGCAGATTGGGCCTTGCGTTGGATTGGGGACAAAGGAGGCTACCTATGGAGAACG 415257 Query 44131 ACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATT 44190 ||| || ||||||| || ||||| || |||||| | | |||||||| ||||| Sbjct 415256 TTGTGTAGCTTTTGCAGCAGTAGAAGGAATCTTCTTTACTGTCTCGTTTGCATAGATATT 415197 Query 44191 TTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCG 44250 ||| | ||| ||||| | |||||||||| | || ||||| ||||| | || || | Sbjct 415196 CTGGCTCAAGGAACGAAGACTGATGCCTGGTCTCACATTTTCCAATGAACTGATTAGCAG 415137 Query 44251 TGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAA 44310 ||||| | ||||| || || |||| | | || | | | || | || || Sbjct 415136 AGATGAGAGTTTACACTGTAATGTTGCCTACCTGATGTTCAAACGCCTGCTACACTAT-- 415079 Query 44311 GCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGA-TAGAACAAGAAT 44369 || | | ||| | | | ||| || || | | || || |||| | ||||| || | Sbjct 415078 -CCGTTAGAGCAGAGAGTGAAAGAAATCATTATCAATGCTGTCAAGAGTGGAACAGGAGT 415020 Query 44370 TTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAA 44428 | | ||| || || ||||| || | || | ||||| || | |||||||| || Sbjct 415019 TCCTCACAGAGGCTTTGCCTGTGAAGCTCATTGAGATGAACTG--CGCTTGATGAAGCAG 414962 Query 44429 TATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGG---TTGCGATAAACACTAT 44485 || ||||| | |||| || | | | |||||||||| | ||| | | Sbjct 414961 TACATTGAGTTTGTTGCCAATAGACTTATGCTGGAACTGGGATTTAGCG---AGGTTTTC 414905 Query 44486 ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTT 44545 | ||| ||| || ||||| |||||||| ||||||| ||||||| || || ||||| Sbjct 414904 AGAGTAGGAAATCCATTTGACTTTATGGAGAATATTTTACTGGAAGGAAAGACTAACTTC 414845 Query 44546 TTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||||| || | || || || |||||| | ||||| || ||| Sbjct 414844 TTTGAGAAGAGAGTAGGTGAGTATCAGAGGATGGGAGTTATG 414803 >seq489 Length=4164533 Score = 116 bits (128), Expect = 3e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 47237 TATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTA 47296 ||| | ||| | || ||| | ||||||| || || || ||||| ||||| || |||| Sbjct 1190317 TATAAGAAAACTGGTAAATTGGTATTTCTTGGATTGGATAATGCGGGAAAGACAACATTG 1190258 Query 47297 CTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTACATCCGACCTCT 47356 || |||||||| ||| | | | | | ||||| ||| ||| | ||||| || || Sbjct 1190257 CTACACATGCTAAAAGATGACAGACTTGGACAGCATGTCCCAACACTGCATCCCACATCA 1190198 Query 47357 GAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTAGGAGGACACATTCAA 47416 ||| |||| || ||||||||||| || | || || |||||| | || ||||| |||||| Sbjct 1190197 GAAGAACTGACCATTGCTGGCATGACTTCTACAACTTTTGATCTGGGTGGACATATTCAA 1190138 Query 47417 GCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATAGTTTATATTGTAGAC 47476 || | ||| ||||| || | || ||| || || ||| || || | | | || || Sbjct 1190137 GCTCAAAGAGTGTGGAAACACTACCTTCCTGCTATTAATGGCATTGTATTTTTGGTGGAT 1190078 Query 47477 TGTGCAGAT 47485 ||||||||| Sbjct 1190077 TGTGCAGAT 1190069 >seq388 Length=3990105 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | | || ||||| ||||| ||||||| |||| Sbjct 2997310 TGATGGCGCTGCCTCCATGCCATGCGCTCTGCCAGTTCTACGTGGTGGATGGTGAGCTGT 2997369 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| |||||||| || || || || || ||||| || | Sbjct 2997370 CCTGCCAGCTCTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATTGCCA 2997429 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| |||||||||||||||||||||||| Sbjct 2997430 GCTATGCCCTGCTCACGTATATGATTGCACAC 2997461 >seq40404 Length=1594814 Score = 109 bits (120), Expect = 4e-19 Identities = 182/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 47222 CAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCA 47281 || ||||||||| | || | ||| | || ||| | ||||||| || || || |||| Sbjct 581697 CAGTTTTTAGGATTATAAAAGAAAACTGGTAAATTGGTATTTCTTGGATTGGATAATGTG 581756 Query 47282 GGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACA 47341 ||||| || | || || ||||| || ||| | | | | | ||||| ||| ||| Sbjct 581757 GGAAAGACAACGTTGCTACACATACTAAAAGATGACAGACTTGGACAGCATGTCCCAACA 581816 Query 47342 TTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTA 47401 | |||| || || ||| |||| || ||||||||||| || |||| || |||||| | Sbjct 581817 CTGCATCTCACATCAGAAGAACTGACCATTGCTGGCATGACTTTTACAACTTTTGATCTG 581876 Query 47402 GGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATA 47461 || ||||| ||||||| || ||| ||||| |||| || || || || ||| || Sbjct 581877 GGTGGACATGTTCAAGCTCGAAGAGTGTGGAAAAACTACCTTTCTGCTATTAATGGCATT 581936 Query 47462 GTTTATATTGTAGACTGTGCAGA 47484 || | | | || || |||||||| Sbjct 581937 GTATTTTTGGTGGATTGTGCAGA 581959 >seq75 Length=11204613 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| || ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 8452385 CAAGAAGTTCAGATAACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 8452326 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 8452325 ATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGAT 8452278 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||||| || ||||| || |||||||| || |||||||| Sbjct 8448355 GGAGAACGTGTTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGCTCGTTTGCA 8448296 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| ||||||| || | || ||||| ||||| | Sbjct 8448295 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCTAATGAACTG 8448236 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 8448235 ATTAGCAGAGATGA 8448222 >seq199 Length=4383281 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 4234918 AAAATCCCTTTGATTTTATGGAAAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 4234977 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 |||| ||| ||| |||||||| | | || ||| ||| | || ||| |||| Sbjct 4234978 AACGAGTTTCAGAGTATCAGCGTTTTGCAGTTATGGCAGAAACCACAGATAATGTCTTTA 4235037 Query 44610 CTACGGATGAAGATTTCTAAT 44630 | ||||| |||||| |||| Sbjct 4235038 CCTTGGATGCAGATTTTTAAT 4235058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397210167253750