Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq53 132 6e-26 >seq53 Length=2810707 Score = 132 bits (146), Expect = 6e-26 Identities = 476/727 (65%), Gaps = 32/727 (4%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | || || ||||||| | | |||||||| |||||||| || || || | Sbjct 1303186 GTAGATGTTGCTGGTATAAGGTTCAATGGACTCATTATTCCCCAAGATCTGAGCAGTTGC 1303127 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGT 110824 || || | |||||| || || | | |||||| | | ||| | || ||| || Sbjct 1303126 AGCAGTAGTCATTGGGGCAATAAGTAAACTGTTTCTTACACCATACT--TTGCAATCTTG 1303069 Query 110825 TCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 |||||||||| | |||||| | | | | | || | || |||| ||| ||| ||| Sbjct 1303068 TCCTTGAGAAGTTTCCAGTCCCACAGGTCTG-TGGGAGTAACATTCC-ACACATCATACT 1303011 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 |||| | ||| | | ||||| |||||| ||||||| || | ||| | ||| | Sbjct 1303010 GAAGAATTTCTTTGCTTACTGGAGAGCCCTCATAGGTTTCCTATGGACCATACTCTTTGG 1302951 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| |||||||| || |||| || | | | ||| || |||| |||||| | ||||| Sbjct 1302950 CCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATAGTTTGAAAGATTTGCTTATTCA 1302891 Query 111003 TCTCCTTGGCTTCATCTGAA---TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 111059 || | | || || | ||||||| || | ||| ||||| |||| || | Sbjct 1302890 GTAACTGGACCTC---TGGACTTTCAAATGGATATCTCATCAAGATAAAAGCATCAGCCA 1302834 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-- 111117 || ||||||| || | ||||| || || || |||| || | || | ||| Sbjct 1302833 GAACTTGAACCCCAATTCCAATGGGGTGATGGCGTTTATTTGA--TACGTAT-GCCTCTG 1302777 Query 111118 -AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-G 111173 || || || | ||||| | ||| | | || | | ||| | |||||| ||| | Sbjct 1302776 GAATAGGGTAGTAGTTTCTATTAATAATTTTATTCA-AGTTTCG--AACAATGACTTCAG 1302720 Query 111174 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT-TGACATACTTTGGA 111232 ||| |||| || || | | | || || || || | | || |||||||| | Sbjct 1302719 TGACTTCAGCCAGCTTCTTAAAGTC----GTACGTGTGTTCTGATGTGACATACATATTC 1302664 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 ||||| | || ||||| || ||||| || ||| || || || ||||||| ||| Sbjct 1302663 AGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCCTCTTTGCTGGTATACTCTACTATT 1302604 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 ||||| || | |||| | || || | |||| |||| ||||| ||||| | || Sbjct 1302603 TCTGTGCACAGGTTGCTGCATTTGATTGCTCCCAGGTTCTGCTGGTTGCTCTTATGATTA 1302544 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || | || ||||||||||||||||| || | ||||| ||||| || | | |||||| Sbjct 1302543 CAGGAATTTTTGTAGAGCATGTAGGG-GTGTCAGTCTCTGTCTGAGACTCAATAATAGCA 1302485 Query 111413 TTCCAAA 111419 | ||||| Sbjct 1302484 TACCAAA 1302478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627633592200000