Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq388 93.3 3e-14 seq598 87.8 1e-12 >seq388 Length=3990105 Score = 93.3 bits (102), Expect = 3e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||||||||| || ||||| || || || |||||||| || ||||| Sbjct 2997469 CCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACG 2997410 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||| ||||| || || || || ||||| || || || | | | ||| Sbjct 2997409 CCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACCACG 2997350 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||||| |||||| Sbjct 2997349 TAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATC 2997311 >seq598 Length=3788045 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||| || |||||||| ||||| |||| | | || ||||||||||| | ||||| Sbjct 455819 ATCCCAGATTTTCACTCCCTTAGAAGATAGTTTATTAGCGTTTGTGGATCCCTTGATAAA 455878 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 ||| ||||| ||||||| |||||| |||||| | || | || || || ||||| ||||| Sbjct 455879 CCAAAGCAACTCTTCCAAAACCCCCTTCCAGAATACAC-GTTGGTTGTCAGCAGAGGAAA 455937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391703175522250