Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq439 100 3e-16 seq199 93.3 5e-14 seq75 82.4 8e-11 >seq439 Length=3327763 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||||||||||| ||||| ||| ||| || || ||||| || Sbjct 2475257 GTGAAAATGTAACGAGGACTTGCAGCATCTTTGCCGCCATGAAGCCGAGTCCCGAACTGG 2475198 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || | || ||||| | |||||| |||||| ||||| ||||||| || ||| Sbjct 2475197 CCGATGGGTTGCAGCAGGTTAATGTTGTTACTGCCCACGAAGTTCTGAGCCAGATTCACA 2475138 Query 117425 ATCGT 117429 ||||| Sbjct 2475137 ATCGT 2475133 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | || || ||||| ||||| || ||||| || || ||||| Sbjct 2475257 GTGAAAATGTAACGAGGACTTGCAGCATCTTTGCCGCCATGAAGCCGAGTCCCGAACTGG 2475198 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||| | || ||||| | |||||| ||||||||| |||||||||| ||||||| Sbjct 2475197 CCGATGGGTTGCAGCAGGTTAATGTTGTTACTGCCCACGAAGTTCTGAGCCAGATTCACA 2475138 Query 152149 ATCGT 152153 ||||| Sbjct 2475137 ATCGT 2475133 >seq199 Length=4383281 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||| ||||||||||| || | ||||||| Sbjct 4204741 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCTTC 4204682 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || ||| || || || |||||| || ||||| ||| |||||||| Sbjct 4204681 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 4204622 Query 74892 ACAA 74895 |||| Sbjct 4204621 ACAA 4204618 >seq75 Length=11204613 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| |||| |||||| ||||| | ||||| ||||| ||||| || ||||| Sbjct 8448222 TCATCTCTGCTAATCAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8448281 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || || ||| |||||||| ||||| || |||||||| Sbjct 8448282 AGCCAGAATATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 8448341 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 8448342 ACAACACGTT 8448351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546868859850000