Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq133 100 3e-16 seq44217 93.3 5e-14 >seq133 Length=10473765 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| ||| |||||| || ||| | || |||||| | || ||| | || || | Sbjct 3213922 ATAGCTGCAGCGCTGTGGTGGTACTTTGTATCGAAAGGTGTTGAGTATTTGGACACAGTG 3213863 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 || || || | || |||||| ||||||||| || | ||||||||||| || | | Sbjct 3213862 TTTTTTATCCTAAGGAAGAAAAACAACCAAGTTTCTTTCCTTCACGTATACCATCACTGT 3213803 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 ||||||||||| || | |||||||| ||||||||| | ||||| ||||| Sbjct 3213802 ACCATGTTTACATTGTGGTGGATAGGAATTAAATGGGTCGCAGGGGGACA 3213753 >seq44217 Length=341162 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||| | ||| |||| | || || ||||| | || || || Sbjct 123243 ACTTCTTCTATTTCTGGGTAAAAAATTCGTTCACAAATGAGCTGTGCAATTCGGTCACCT 123184 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||||||||||| | | ||| | |||||| || Sbjct 123183 TTTTTAACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTCTA 123124 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| | || || || ||||| || || Sbjct 123123 TAATCTTCATCTATGACACCAGCTCCTACATCTACGAAGTGTTTTGCAGCCAAGCCAGAA 123064 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||||||| | || || | | |||| ||| |||||| | || Sbjct 123063 CATGGAGCTACTCTTCCATAACACCCAGAAGGAAGAGCTATCTGAATGTCAGTCTTCACA 123004 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | ||| |||||||| | | ||||| ||| || || || || || || || || Sbjct 123003 AGGGCTTTCTCCATAGGTGGCACTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGC 122945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602798157180000