Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq191 116 5e-21 >seq191 Length=10176270 Score = 116 bits (128), Expect = 5e-21 Identities = 236/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| ||||| || || |||||| | || ||||| || || ||| | Sbjct 8684290 GAAGAGGCGGAGTTTCCGATCGCATATTCTATCGTGGTTCATCACAAAATTGAAATGCTT 8684231 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | |||||||||||||||||| || ||||| |||| ||| | ||||||||| Sbjct 8684230 GACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATTCACGTGGACAGA 8684171 Query 13803 AAGTCCGGCGACGAGTTC--ATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 ||||| | || ||| | | | || | | | |||||| || |||| ||||| Sbjct 8684170 AAGTCAGAGGAGTCCTTCTTAGCTGCGGTGACCAG--CATCGCGTCCTGTTTCCATAACG 8684113 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | | ||||| | | || | ||||| || | || |||||||| || ||||||| Sbjct 8684112 TCTTCGTGGCCAGTCAGTTGGAGAGTGTGGTTTATGCATCGTGGAGTCGAGTTCAGGCCG 8684053 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGT-CA-AGTGGAGGTACCTGCTCAA 13978 | |||| ||||||| ||||| | || || || | |||| |||| || |||| Sbjct 8684052 ATCTCAACTGCATGAAAGACCTCTA--CCGAATGAGTACACACTGGAAGTACTTGATCAA 8683995 Query 13979 CCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 || || || ||| || || | || ||||||||||| || || Sbjct 8683994 TCTCTGTGGTCAGGATTTTCCTATTAAAACCAACCTGGAAATTGT 8683950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658321312320000