Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq598 185 7e-42 seq388 134 1e-26 seq46569 111 1e-19 seq398 100 2e-16 seq579 96.9 3e-15 seq44019 86.0 5e-12 seq73 82.4 6e-11 >seq598 Length=3788045 Score = 185 bits (204), Expect = 7e-42 Identities = 433/648 (67%), Gaps = 29/648 (4%) Strand=Plus/Plus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTT-ATCCAGGTA 29898 ||||| ||||| || || |||| |||||| | ||| | || || | | || |||||| Sbjct 455291 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCGGTGGCTCAGCCATGATTCAGGTA 455350 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 || | |||||||| | || ||||| || || || || | |||| ||| || Sbjct 455351 ACTATGTGGGTCTCCCAAAGTATGTACAAAGTCACCTGGCCTAAGGTCTGTGATGTGTGC 455410 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT-AAAGG-GTACCCCGAGCCCCATG 30016 ||||| |||||||| | | |||||||| ||||| ||||| || ||| | || | | Sbjct 455411 AATCATATACGTGAGCGGGGCATAGCTGGCAATGTTGAAAGGCGTGCCCAGGACCACGTC 455470 Query 30017 TCCC-----CCGACCTCTGG----TAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 30067 |||| |||||||| | |||||||| || || ||||| ||||| |||| | Sbjct 455471 TCCCGACCTCCGACCTCCGTCCGATAGAGCTGGCAGGACAGCTCGCCGTCCACCACGCAG 455530 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127 ||||| || | ||||||| ||||| | ||||| || | |||| || ||||| Sbjct 455531 AACTGGCAGAGCGCGTGGCCTGGAGGCTGCGCCATCAGAGGGAGAGCTTTTGGATTCCAA 455590 Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30187 || || ||||| | ||||| || || ||| |||| ||| | | |||||| Sbjct 455591 GCACAGGTGATGAGTCTTCTGTCGTCAGGATTGGCTTTGATAGTGTCAATCACTTTTTGC 455650 Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 || || || || ||| || ||||||| |||| | |||| ||||| || ||| Sbjct 455651 AGTTGGTCTACTTTTTGCCCAGAATAGTCTGAATTCATATTTTTGTATTCTGCCCCAAAA 455710 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || ||||||||||| || || || || |||| ||| || ||||| ||| ||| ||| Sbjct 455711 TGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCACCTTCTTCTCTGGTGGAGAATCCC 455770 Query 30308 CTCTTGTCCAAAAAGTC------TC--TGGA--------ACCGTTGGCGTCCCAGATCTT 30351 ||||||||||||| || || | | | ||| | |||||||| || Sbjct 455771 AGGCTGTCCAAAAAGTCCTGAGATCATTGTAGCCCCGAGATCATTGTCATCCCAGATTTT 455830 Query 30352 TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30411 || ||||| ||| || | || | ||||||||| || ||| ||||| |||| ||| Sbjct 455831 CACTCCCTTAGAAGATAGTTTATTAGCGTTTGTGGATCCCTTGATAAACCAAAGCAACTC 455890 Query 30412 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 |||| || ||||||| || || | ||||| || || || ||||| Sbjct 455891 TTCCAAAACCCCCTTCCAGAATACAC-GTTGGTTGTCAGCAGAGGAAA 455937 >seq388 Length=3990105 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || ||||| |||||||| || | |||||||| ||||| ||||| Sbjct 2997472 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2997413 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||||||||| || || ||||| || || | Sbjct 2997412 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2997353 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 2997352 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAG 2997309 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || ||||| ||||||||||| || || || || |||| ||| || |||| Sbjct 2992999 TGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTT 2992940 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | ||| ||| ||| ||||||||||||||| || || ||||| |||||||| | Sbjct 2992939 CTCTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTT 2992880 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || ||||| ||| || || |||| ||||||||| || Sbjct 2992879 TCACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGGATCC 2992840 >seq46569 Length=4817335 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || || || | Sbjct 4565593 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 4565534 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| || Sbjct 4565533 TAAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGGTATT 4565474 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 110557 || || ||| |||||||| |||| |||| || |||| | ||||| || || | Sbjct 4565473 TTGTTTACCTTCTACTGAAGAGGTAGTGGTCGTTCTCTGGAAA-TACTTAAATTCATTCC 4565415 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGG 110612 ||| ||| |||| ||||| || ||||| || ||||||||||| ||||| Sbjct 4565414 TGAGT------GGAGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATTTCTGG 4565366 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/241 (70%), Gaps = 10/241 (4%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || || ||||| |||| || || || || | Sbjct 4191913 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 4191972 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||| ||||||||| || ||||| || || ||||| |||||||| ||||| || Sbjct 4191973 TAAAGGCTGATTCTTTTCAGGAATGGAAAATCAGGTCTTCCTACCCATAATCACGGTATT 4192032 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 110557 || || ||| |||||||| | | ||||| || |||| | ||||| || || | Sbjct 4192033 TTGTTTACCTTCTACTGAAGAAATTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTCC 4192091 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 110615 || ||| | |||| ||||| || || || || |||||||||||| ||| ||||| Sbjct 4192092 TGAG-----CAG-AGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGGGACA 4192145 Query 110616 C 110616 | Sbjct 4192146 C 4192146 >seq398 Length=3125954 Score = 100 bits (110), Expect = 2e-16 Identities = 170/240 (71%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 110380 TGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTC 110439 |||||||| || || || || || || || |||| || | || || |||||| | Sbjct 2057361 TGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAAAACAAAATTAATTCTGTCTTTT 2057302 Query 110440 AGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTC 110499 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| | || Sbjct 2057301 AAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGATATTT 2057242 Query 110500 TGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCA 110558 || || ||| |||||||| || ||||| || |||| | ||||| || || | Sbjct 2057241 TGTTTACCTTCTACTGAAGAAGTTATGGTCATTCTCTGGAAA-TACTTAAATTCATTCCT 2057183 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 110616 || ||| | |||| |||| || ||||| || |||||||||||| ||| |||||| Sbjct 2057182 GAG-----CAG-AGGCCAGGGCAAGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGACAC 2057129 >seq579 Length=4107578 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/240 (70%), Gaps = 11/240 (5%) Strand=Plus/Minus Query 110380 TGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTC 110439 |||||||| || || || || || || || ||||| || | || || |||||| | Sbjct 165511 TGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACAAA-TTAATTCTGTCTTTT 165453 Query 110440 AGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTC 110499 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| | || Sbjct 165452 AAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGATATTT 165393 Query 110500 TGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCA 110558 || || ||| |||||||| || | ||||| || |||| | |||| || || | Sbjct 165392 TGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAA-TAATTAAGTTCATTCCT 165334 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 110616 || ||| |||| |||| || | ||| || |||||||||||| ||| |||||| Sbjct 165333 GAGC------GGAGGCCAGGGCAAGTCCCGGTTCTTGCCGATGCCCATGTTCTGGGACAC 165280 >seq44019 Length=1131195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/237 (70%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| | || || || || || || || || || |||| || || || || | Sbjct 313221 ATGAGCTCCTGGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTAAATTAATTCTATCCTT 313162 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||| ||||||||| || ||||| ||||| ||||| |||||||| |||| | || Sbjct 313161 TAAAGGCTGATTCTTTTCAGGAATGGACAACCAGGTCTTCCTACCCATAATCATGATATT 313102 Query 110499 CTGCTTGCCT-CTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTG 110556 ||| || ||| ||| ||||||| || | ||||| || |||| | ||||| || || Sbjct 313101 CTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTC 313044 Query 110557 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 110612 | || | || |||| || || || ||| || | |||||||||| ||||| Sbjct 313043 CTGAGCC------GAGGCCAGGGTAGGTCCTTGTTCTTGCTGATGCCCATGTTCTGG 312993 >seq73 Length=665562 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/178 (72%), Gaps = 10/178 (6%) Strand=Plus/Plus Query 110442 AGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTG 110501 ||||| |||||||| ||| || ||||| || ||||| ||||| || ||| ||| ||||| Sbjct 296083 AGGTCAATTCTTTTTGGGAATAGAGAAACAGGTCTTCCTACCTATAATCTCCATATTCTG 296142 Query 110502 CTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCAAA 110560 || ||| |||||||| |||| ||||| || |||| | || || || || | | Sbjct 296143 TTTACCTTCTACTGAAGAGGTAGTGGTCATTCTCTGGAAA-TACTTGAATTCATTCCTGA 296201 Query 110561 GTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 110616 | ||| | |||| ||||| || || || || | |||||||||| ||| |||||| Sbjct 296202 G-----CAG-AGGCCAGGGCAGGTCCCCATTCTTGCTGATGCCCATGTTCTGGGACAC 296253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406059090669000