Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq43265 111 1e-19 seq139 82.4 5e-11 >seq43265 Length=2440742 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||||| | ||||| ||||| |||||| ||| ||| || || |||||||| || || Sbjct 2202529 GCCGCCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGA 2202588 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || ||||| ||||||||||| | |||||| |||| || || Sbjct 2202589 AAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTGGGTGG 2202648 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| ||| || Sbjct 2202649 GATGCCCTCCTTGTCTTGGATTTT 2202672 >seq139 Length=10686148 Score = 82.4 bits (90), Expect = 5e-11 Identities = 164/241 (68%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||||| ||||||| ||||| ||||| ||| ||| || || ||||| | || Sbjct 400204 GTTGCCGCCTCACAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGCAGTC 400145 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGC------TGTTG 34589 || || | || | || || || ||||| ||||||||||| | |||| || || Sbjct 400144 AGACAGCATGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTGGTG 400085 Query 34590 GTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTT 34648 || || || | |||||||||||| ||| ||| | || || | || ||||| Sbjct 400084 GTGGGGGGGGATGCCCTCCTTGTCTTGGAT-TTTGGCCTTGACATTCTCCATGGTGTCAC 400026 Query 34649 CGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGT 34708 | ||| || || | ||| || || || || || | || ||||| || |||||||| | Sbjct 400025 TGGCCTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCT 399966 Query 34709 T 34709 | Sbjct 399965 T 399965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314534934824750