Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028654.1 Length=56275 Score E Sequences producing significant alignments: (Bits) Value seq49917 791 0.0 seq50663 470 5e-128 seq38559 284 4e-72 seq39852 80.6 1e-10 >seq49917 Length=2087 Score = 791 bits (876), Expect = 0.0 Identities = 926/1246 (74%), Gaps = 9/1246 (1%) Strand=Plus/Plus Query 15085 CCCCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTAGGTGTCATCGTCGAGACA 15144 || || |||| |||||||||||||| || || |||| || ||| | ||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15145 GCGGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCA 15204 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15205 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAACTACTACGTGATTTGG 15264 ||||| |||| | || ||||||| || | |||||||| |||||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15265 CCGTCGTGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCACACGCGGTGTTCGTGTGGGCG 15324 ||| |||||||||| || || || ||||| | || ||||| | ||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15325 TTGCAAACCGTCGTTGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15384 | | ||| ||| |||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15385 CTGGAGTTCATCAACAACGGCTTGTCGTT-----GAACCCGGATATCCGGGCATGGTTCG 15439 ||||||||| ||||||||| | |||| | |||| || |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15440 GCACTGTGTTGCAGGCGTTGTCGCGTGATGGGTTGTCGGTGCAGGCGTTTACCCGCATGC 15499 |||| | ||||| || | ||| || | | ||||||||| | || | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15500 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCGATGGTCG 15559 |||| ||||| |||||| |||||||| ||||| ||||||| ||||| ||| || Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15560 CGCGGACAGTGCGGATGGAAACCGTTCAG-GCCGTCATCAAGGACGTTACCCAGTCGTAC 15618 | ||| || || ||||||||| | | | | ||||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15619 GGTGTGGATACTCGCATGGATTTGTGGCTGCCGGGTGATCCGCAGCCTGACCGGTGGGCG 15678 |||||||| || |||||||| |||||| |||||||| ||||| || ||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 15679 AACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGCCCG 15738 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 15739 ACGAAAACCGTGCTGGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGGG 15798 || |||||||| ||||||||| | || ||| ||||| ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 15799 GACATCTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGATGGCGTGTTTTATGCGCCC 15858 ||||||||||| || |||||| ||||||| ||||| ||| | || ||||| || || ||| Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 15859 GCGTTGGGTGTGGATTTTGAGCAGCCGTACGCGTATTTCGTGGCGCCTGAGCCGGGTGAG 15918 | | ||||| ||||| |||||||| ||||| || |||| || || || ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 15919 GACACCGGCATCGATGCA-TGCACGATCACTGACCACACCCCCGAGGGTTGGCAGCACAT 15977 ||| || |||| || | ||| ||| | ||||||||||||||||| ||||| ||||| Sbjct 906 GACTCCAACATC-ATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACAT 964 Query 15978 CATTGGTGGGCGTTCCCCAAAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCT 16037 ||| || || ||||| |||||||||||||||||| | |||||||||||||||||| || Sbjct 965 CATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTG 1024 Query 16038 TATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGG 16097 || | |||||||||||||| ||||| ||| ||||||| ||||| |||||||| ||||| Sbjct 1025 GATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGG 1084 Query 16098 GTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGA 16157 |||||||||||||||||||||||||||||| || | || ||| | ||| ||||| Sbjct 1085 ATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGA 1144 Query 16158 AGTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 16217 || ||||| | ||||||||||||||||||||||| ||||| ||| || |||||||| Sbjct 1145 GGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAA 1204 Query 16218 CATCGAGACAGTCTTTGCATTCATCAACGCTTTGTTTGATTCGCAGGGTAAGACGACGGC 16277 |||||| || | || || ||||||||||| | || ||| | || ||| || ||||| Sbjct 1205 CATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGC 1264 Query 16278 GACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGGCGTGAC 16323 | ||| ||||||||||||| ||| ||||| || || || ||| Sbjct 1265 GCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGAC 1310 >seq50663 Length=1982 Score = 470 bits (520), Expect = 5e-128 Identities = 471/609 (77%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15817 ATCAAGCAGGTTCCCGGCATGGATGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTT 15876 || ||||| | ||||||||||| || |||||||| ||||| | |||||| | || Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15877 GAGCAGCCGTACGCGTATTTCGTGGCGCCTGAGCCGGGTGAGGACACCGGCATCGATGCA 15936 ||||| || ||||| ||| | || ||||| || | ||||||||| | |||| | Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 15937 TGCACGATCACTGACCACACCCCCGAGGGTTGGCAGCACATCATTGGTGGGCGTTCCCCA 15996 ||| |||||| |||| |||||||||||||||||||||||||| ||||| ||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 15997 AAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCTTATCGACTCGCTGATGATC 16056 ||||||||||||||| ||||||||||||| ||||| ||| | ||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16057 GTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 16116 || ||||| ||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16117 CTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 16176 ||||| |||||| | | || ||||||||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16177 GCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAACATCGAGACAGTCTTTGCA 16236 ||| ||||||| |||||||| || || ||||| || ||||||||||| ||||| || || Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16237 TTCATCAACGCTTTGTTTGATTCGCAGGGTAAGACGACGGCGACGGTGCAGTTCCGCAAC 16296 ||||||||||| | |||||||| ||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16297 GGTGCCCAGTATGCGTTGGGGCGTGACGTGTTTCGTGGCGGCCTGATGTCGTTGGTGT-T 16355 |||| ||| || || ||||| | ||||| || ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16356 CATGTCTCGTACCCGCATGGTGACTGACTACATCGAGAATGTGATGTGGCGGGTTACCCA 16415 || | | || ||| ||||| || |||||||||||||| || |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16416 GGATGAGCG 16424 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 152 bits (168), Expect = 2e-32 Identities = 204/284 (72%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 15373 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCTTGTCGTTGAACCCGGATATCCGGGCA 15432 ||||| |||||| |||| ||| |||||||| | ||||||||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15433 TGGTTCGGCACTGTGTTGCAGGCGTTGTCGCGTGATGGGTTGTCGGTGCAGGCGTTTACC 15492 ||||||||||| | |||| || || || ||||| ||||| | || | || | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15493 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCG 15552 |||||||| || || || |||||| || ||||| ||||| ||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15553 ATGGTCGCGCGGACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCAG 15612 || || ||| || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAGACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCGA 1133 Query 15613 TCGTACGGTGTGGATACTCGCATGGATTTGTGGCTGCCGGGTGA 15656 | |||||||| ||||| || |||||| |||||| ||| || || Sbjct 1134 GCCTACGGTGTAGATACCCGTATGGATCTGTGGCGGCCCGGGGA 1177 Score = 141 bits (156), Expect = 3e-29 Identities = 234/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 14971 TGCGACAAATTCTGGCAGCCGATGGGCTCGGTTGGTGGCGACCTGATCGAGGCGTCGGGT 15030 |||| ||| |||||| || ||||| | | || ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 15031 GCTGACCCGCGCAACGATGTGGAAACCGGCCGGATCGTACTCAAAGGGAACAGTCCCCTC 15090 | || || || || || |||| ||||||| | ||| || | || || ||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15091 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTAGGTGTCATCGTCGAGACAGCGGGT 15150 | | |||||||||||||| || |||||||| || | || ||||| ||||| Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15151 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCATGGACC 15210 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15211 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAACTACTACGTGATTTGGCCGTCG 15270 || || | ||| || |||||| | ||||| |||||||| |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15271 TGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCACACGC 15308 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 284 bits (314), Expect = 4e-72 Identities = 286/369 (78%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16039 ATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16098 ||||| ||||||||||||| ||||| ||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16099 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGAA 16158 ||||||||||||||||||||||| |||||| | || || ||||||||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16159 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAAC 16218 || ||||| ||||| || ||| ||||||| |||||||| || || ||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16219 ATCGAGACAGTCTTTGCATTCATCAACGCTTTGTTTGATTCGCAGGGTAAGACGACGGCG 16278 ||||| ||||| || || ||||||||||| | |||||||| ||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16279 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGGCGTGACGTGTTTCGTGGCGGC 16338 || ||||||||| |||| ||| || || ||||| | ||||| || ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 16339 CTGATGTCGTTGGTGT-TCATGTCTCGTACCCGCATGGTGACTGACTACATCGAGAATGT 16397 |||||||| | || | || | | || ||| ||||| || |||||| ||||||| || Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 16398 GATGTGGCG 16406 |||||||| Sbjct 748 CATGTGGCG 756 Score = 145 bits (160), Expect = 3e-30 Identities = 196/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15649 CCGGGTGATCCGCAGCCTGACCGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 15708 || |||||| |||||| || | |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15709 ACAGTGGACCGGTCGCAGATCACTGGCCCGACGAAAACCGTGCTGGATTCGGTGCTGCGC 15768 || || ||||| || ||| ||||| || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15769 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 15828 || | ||||| || || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15829 CCCGGCATGGATGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTTGAGCAGCCGTAC 15888 ||||||||||| || ||||| || ||||| | |||||| | || ||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15889 GCGTATTTCGTGGCGCCTGAGCCGGGTGAGGAC 15921 || ||| | || ||||| || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq39852 Length=3441 Score = 80.6 bits (88), Expect = 1e-10 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 36179 CAGTCCGACTTCCTCGTCACTCGGTTCGCGGCATACCTGATCGCCATGAACGGCGATCCA 36238 ||| | |||| || | || | |||| ||| || || |||| | || ||||||||| Sbjct 1321 CAGGCTGACTACCACCTCTCCCGGTACGCCTGCTATCTCGTCGCACTCAATGGCGATCCA 1380 Query 36239 CGCAAACCGGAAGTGTCGGCCGCACAGGAGTACTTCGCCGTCAAGACCCGTGAGGCCGAG 36298 ||||| || ||| | | ||||| ||| ||||||| | |||||||||||||||||||| Sbjct 1381 CGCAAGCCTGAAATCGCAGCCGCGCAGACATACTTCGTCATCAAGACCCGTGAGGCCGAG 1440 Query 36299 AC 36300 || Sbjct 1441 AC 1442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179849946945500