Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028747.1 Length=47618 Score E Sequences producing significant alignments: (Bits) Value seq46136 183 9e-42 seq42164 125 2e-24 seq45817 111 5e-20 seq46043 80.6 8e-11 >seq46136 Length=4795 Score = 183 bits (202), Expect = 9e-42 Identities = 192/251 (76%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 12109 TGGCAGCGGCTGTTCGGCACCCAGTTCGAGGACATGGGCGACGCTATCAACCATCTCGAC 12168 ||||| || || |||||||| |||| |||||||||||||| ||| ||||| | |||||| Sbjct 800 TGGCAACGCCTTTTCGGCACGCAGTGGGAGGACATGGGCGATGCTGTCAACAAACTCGAC 741 Query 12169 CTCGACCCAGCCAAAAACGAGTTCGTCGACTTGCAGGGCACCTCGGACCGTGCGACCAAG 12228 |||||||| || |||||| ||||| || |||| | ||||||| | || |||| ||| Sbjct 740 CTCGACCCGGCTAAAAACCAGTTCAAGGATCTGCAAGACACCTCGCAGCGATCGACTAAG 681 Query 12229 ACGGCGACGGACAACTTCAAGTCCGACTGGGAGGAAGCGACCCGCACCGTCGGGCAGTTC 12288 || |||||||| | ||||||||||| |||||| || ||| || |||| || | Sbjct 680 ACCGCGACGGAGACGTTCAAGTCCGAGTGGGAGAGCGCAACCAAGACGGTCGATCAATGG 621 Query 12289 TTCTCGGACCTGAAAACCGATATCGCCGAGTGGTTTTCGGATCTGCCGGTCATCCGCGAC 12348 ||| | ||||| || ||| |||| | || |||||| ||||||||| |||||| | ||| Sbjct 620 TTCACCGACCTAAAGACCAGTATCTCGGATTGGTTTGTGGATCTGCCTGTCATCAGGGAC 561 Query 12349 ATTCCG-CGAT 12358 || ||| |||| Sbjct 560 ATCCCGACGAT 550 >seq42164 Length=289 Score = 125 bits (138), Expect = 2e-24 Identities = 142/186 (76%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 4246 TTCGATCTGTCGGTGTTCAACCATGCTGGGCGCTCGCAGGCGCCAGCGCCGCGAATCCCG 4305 ||||||||||||| |||| | |||| || ||| | ||||| ||||| ||||| ||| Sbjct 226 TTCGATCTGTCGGCGTTCCGCTATGCCGGACGCCAGTCCGCGCCTGCGCCACGAATTCCG 167 Query 4306 CAGGCGCACAACCAGACCCCTCAGCCAGTCGAGGCCGAGG-CAAGTGAAAGAGAGGAGCC 4364 | || ||||||| ||||||||| ||| | ||| ||||| ||| | | || ||||||| Sbjct 166 CTGGTGCACAACAAGACCCCTCGGCCCGAGAAGGGCGAGGTCAACAG-AGGAAAGGAGCC 108 Query 4365 CACTGTGGGAACCCTGAGTGAGAGCGCGTTGC--AGAAGCTCGGTCTCGACGCCGACGCA 4422 || ||||| |||||||| | ||| || | || || ||||||| |||| |||||||| Sbjct 107 CATTGTGGCAACCCTGAAT--GAGGGCCTCGCCAAGCTGCTCGGTATCGATGCCGACGCC 50 Query 4423 GACGAC 4428 |||||| Sbjct 49 GACGAC 44 >seq45817 Length=532 Score = 111 bits (122), Expect = 5e-20 Identities = 196/282 (70%), Gaps = 23/282 (8%) Strand=Plus/Minus Query 28037 GTGCGCGTCGTGCTCATCGACGGCGAACCGTGGTTCGTGCTCGCCGACCTCTGCAAGGTG 28096 ||||| ||||| | |||| ||||||||| |||||||| || || ||||||||||||||| Sbjct 279 GTGCGGGTCGTCGTTATCGGCGGCGAACCCTGGTTCGTCCTGGCTGACCTCTGCAAGGTG 220 Query 28097 CTCGACATCCG--CAA-------CGTCAAGGACGTTCGGGATCGCTTAGCGGATGGGG-- 28145 || | ||| | | ||||| ||| ||| | | ||| | | | || Sbjct 219 CTGGGCATTTTGTCGAGTAGTGCCGTCACGGATGTTAAGAAGCGCCTTGACCAGGGCACT 160 Query 28146 -TAGATCAGACCTACCCCATCGCTGACAGCCTCGGTCGCACGCA-GCAGGCGACC---AT 28200 | ||| |||| | || || ||||| || | || || | |||| || Sbjct 159 CTGGATTCGACCAAGGTTAT----GAA---CTCGGCCGGATACATGCGTGAGACCGACAT 107 Query 28201 CGTGTCCGAGTCGGGCATGTACGAGGTCGTCATCCGCTCGGACAAACCCGAGGCTGTCGC 28260 ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 106 CGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGTCGA 47 Query 28261 GTTCCGCCGCTGGATCACCGGCACCGTTCTCCCCGAGATCCG 28302 |||||| || | | || || || ||||| ||| ||||| Sbjct 46 GTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCG 5 >seq46043 Length=3937 Score = 80.6 bits (88), Expect = 8e-11 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 47032 CGCAAGGCCAACACCACCGACAAAGGGCTCGGCTGGGCGCACCAGCAAGACGCAGCCCGC 47091 || ||||||| ||||||||| || || |||||| ||||| || | || | || Sbjct 114 CGTAAGGCCAGCACCACCGATCGCGGTCTGGGCTGGAAACACCAACAGCAAGCCGAGGGC 55 Query 47092 CTGCTACGCCGACACGAGAACGGCACGCTGTGCTGGTGGTGCGGGCTGCCGATG 47145 ||| | ||||| |||| ||||||| |||||||||||||| || ||||||||| Sbjct 54 CTGTTGCGCCGTCACGTCGACGGCACACTGTGCTGGTGGTGTGGCCTGCCGATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152164241970000