Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028792.1 Length=56826 Score E Sequences producing significant alignments: (Bits) Value seq49917 791 0.0 seq50663 488 2e-133 seq38559 293 8e-75 seq45035 107 7e-19 seq43497 80.6 1e-10 >seq49917 Length=2087 Score = 791 bits (876), Expect = 0.0 Identities = 930/1251 (74%), Gaps = 9/1251 (1%) Strand=Plus/Plus Query 16177 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACA 16236 || || |||| |||||||||||||| || || ||||||| ||| | ||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 16237 GCCGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTTCGAGTACCGCGACAGCGCA 16296 ||||| || | |||||||| ||| ||| || | ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 16297 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTTG 16356 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| | | Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 16357 CCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 16416 ||| |||||||||| || || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 16417 TTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 16476 | | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 16477 CTGGAGTTCATCAACAACGGGCTGTCGTTAAACC---CGG--ATATCCGGGCATGGTTCG 16531 ||||||||| ||||||||| ||||| | || ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 16532 GCACCGTTCTGCAAGCGTTGTCGCGGGACGGGTTGTCGGTCCAGGCGTTTA-CACGCATG 16590 ||||| | ||||||| | ||| ||| | | ||||| ||| | || || | ||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAG-ATG 485 Query 16591 CTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCGATGGTG 16650 ||||| ||||| |||||| |||||||| || | |||||||| ||||| ||| Sbjct 486 CTGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGC 545 Query 16651 GCTCGCACAGTGCGGATGGAAACCGTTCAGGCCG-TCATCAAGGACGTTACCCAGTCGTA 16709 || || || || ||||||||| | | | || |||||||||| || |||| | || Sbjct 546 GCCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTA 604 Query 16710 CGGTGTGGATACCCGCATGGATTTGTGGCTGCCTGGTGATCCGCAGCCTGACAGGTGGGC 16769 ||||||||| ||||||||||| |||||| || ||||| ||||| || |||| |||||| Sbjct 605 CGGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGC 664 Query 16770 GAACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGTCC 16829 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 665 CAACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCC 724 Query 16830 GACGAAAACGGTGCTGGATTCGGTGCTGCGCACCACGATTGACTTGGGCGGGTCGCTGGG 16889 || ||||| || ||||||||| | || ||| ||| | ||||| || || || Sbjct 725 CACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGG 784 Query 16890 GGACATCTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGATGGCGTGTTTTATGCGCC 16949 ||||||||||| || |||||| ||||||| ||||| ||| | || ||||| || || || Sbjct 785 TGACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCC 844 Query 16950 CGCGTTGGGTGTGGATTTCGAGCAGCCGTACGCCTATTTCGTGGCCCCTGAGCCGGGTGA 17009 | | | ||||| |||||||||||||| |||||||| |||| ||||| || ||| || Sbjct 845 CAAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGA 904 Query 17010 GGACACCGGTATCGATGCGTGCACGATCACTGACCACACACCTGAGGGTTGGCAGCACAT 17069 |||| || ||| ||| ||| | |||||||| || ||||| ||||| ||||| Sbjct 905 GGACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACAT 964 Query 17070 TATTGGTGGCCGTAGCCCAAAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCT 17129 || || |||||| |||||||||||||||||||| |||||||||||||||||| || Sbjct 965 CATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTG 1024 Query 17130 GATCGACTCGCTGATGATCGTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGG 17189 ||| | |||||||||||||| || || ||| ||||||| ||||| |||||||| ||||| Sbjct 1025 GATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGG 1084 Query 17190 GTTCCTGAACAACAGCTTCTTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGA 17249 |||||||||||||||||| ||||||||||| || | ||| ||| | ||| ||||| Sbjct 1085 ATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGA 1144 Query 17250 AGTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 17309 || ||||| | ||||||||||||||||||||||| ||||| ||| || |||||||| Sbjct 1145 GGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAA 1204 Query 17310 CATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGC 17369 ||||||||| ||||||| ||||||||||| | || ||| | || || || ||||| Sbjct 1205 CATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGC 1264 Query 17370 GACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTT 17420 | ||| ||||||||||||| ||| ||||| || || || ||| |||| Sbjct 1265 GCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 488 bits (540), Expect = 2e-133 Identities = 475/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 16909 ATCAAGCAGGTTCCCGGCATGGATGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTC 16968 || ||||| | ||||||||||| || |||||||| ||||| | |||||| | ||| Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 16969 GAGCAGCCGTACGCCTATTTCGTGGCCCCTGAGCCGGGTGAGGACACCGGTATCGATGCG 17028 ||||| || ||||||||| | || || || || | ||||||||| | ||| || Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 17029 TGCACGATCACTGACCACACACCTGAGGGTTGGCAGCACATTATTGGTGGCCGTAGCCCA 17088 ||| |||||| |||| || || ||||||||||||||||| || |||||||||||||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 17089 AAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCTGATCGACTCGCTGATGATC 17148 ||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 17149 GTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 17208 || || || ||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 17209 TTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 17268 |||| |||||| | | ||||| |||||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 17269 GCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAACATCGAAACGGTGTTCGCA 17328 ||| ||||||| |||||||| || || ||||| || |||||||||||||| || ||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 17329 TTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGCAAC 17388 |||||||||||| | |||||||| |||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 17389 GGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 17447 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 17448 TATGTCACGTACCCGAATGGTGACTGACTACATCGAAAACGTCATGTGGCGGGTTTCCCA 17507 | | | || ||| ||||| || ||||||||||| |||||||||||||| | | | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 17508 GGATGAGCG 17516 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 165 bits (182), Expect = 3e-36 Identities = 209/285 (73%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 16465 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGGCTGTCGTTAAACCCGGATATCCGGGCA 16524 ||||| |||||| |||| ||| ||||||||||| ||||| ||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 16525 TGGTTCGGCACCGTTCTGCAAGCGTTGTCGCGGGACGGGTTGTCGGTCCAGGCGTTTACA 16584 |||||||||||| | |||||||| || || || || ||||| | || | || | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 16585 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCG 16644 |||||||| || || || |||||| || ||||| || | |||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 16645 ATG-GTGGCTCGCACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCA 16703 || ||| | | || || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAG-ACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCG 1132 Query 16704 GTCGTACGGTGTGGATACCCGCATGGATTTGTGGCTGCCTGGTGA 16748 | |||||||| |||||||| |||||| |||||| ||| || || Sbjct 1133 AGCCTACGGTGTAGATACCCGTATGGATCTGTGGCGGCCCGGGGA 1177 Score = 136 bits (150), Expect = 1e-27 Identities = 233/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 16063 TGCGACAAGTTTTGGCAGCCGATGGGCGCTGTCGGTGGCGACCTGATCGAGGCGTCGGGT 16122 |||| |||||| ||| || ||||| |||| ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 16123 GCTGACCCGCGCAACGATGTTGAAACCGGCCGGATCGTCCTCAAAGGGAACAGCCCTCTC 16182 | || || || || || |||| ||||||| | ||| || | ||||||||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 16183 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACAGCCGGT 16242 | | |||||||||||||| || |||||||| || | || ||||| || || Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 16243 TTGCGGTATGCGTTCTACACGAAGAACCACACCTTCGAGTACCGCGACAGCGCATGGACC 16302 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 16303 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTTGCCGTCG 16362 || || | ||| || |||||| | ||||| ||||| || |||||||| | |||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 16363 TGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGC 16400 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 293 bits (324), Expect = 8e-75 Identities = 288/369 (78%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 17131 ATCGACTCGCTGATGATCGTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 17190 ||||| ||||||||||||| || || ||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 17191 TTCCTGAACAACAGCTTCTTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 17250 |||||||||||||||||| |||| |||||| | || ||||| |||||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 17251 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAAC 17310 || ||||| ||||| || ||| ||||||| |||||||| || || ||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 17311 ATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCG 17370 |||||||| || ||||| |||||||||||| | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 17371 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGC 17430 || ||||||||| |||| ||| || || ||||| | |||||||| ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 17431 CTGATGTCGCTGGTGT-TTATGTCACGTACCCGAATGGTGACTGACTACATCGAAAACGT 17489 |||||||| | || | | | | || ||| ||||| || |||||| |||| ||||| Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 17490 CATGTGGCG 17498 ||||||||| Sbjct 748 CATGTGGCG 756 Score = 141 bits (156), Expect = 3e-29 Identities = 195/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16741 CCTGGTGATCCGCAGCCTGACAGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 16800 || |||||| |||||| || |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 16801 ACAGTGGACCGGTCGCAGATCACTGGTCCGACGAAAACGGTGCTGGATTCGGTGCTGCGC 16860 || || ||||| || ||| || || || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 16861 ACCACGATTGACTTGGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 16920 || | ||| |||| || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 16921 CCCGGCATGGATGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTCGAGCAGCCGTAC 16980 ||||||||||| || ||||| || ||||| | |||||| | |||||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 16981 GCCTATTTCGTGGCCCCTGAGCCGGGTGAGGAC 17013 |||||| | || || || || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq45035 Length=256 Score = 107 bits (118), Expect = 7e-19 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 15457 TATGACGGTCCCGGCGCGGATGAGTATGTGGAGTTTGGTCCGCTGCTGCCCAATCAGATT 15516 || ||||| |||||| |||| | ||||| || || || |||||||| ||||||||| | Sbjct 59 TACGACGGGCCCGGCTCGGACCAATATGTCGAATTCGGGCCGCTGCTACCCAATCAGGTG 118 Query 15517 GTGTTCCTACGTACCGACCCGCGCTCACAGACGACGTTGGTGCAGGATTTGACGTCGGTG 15576 ||||| | || ||||| |||||| || || || |||||| | || | || |||||| Sbjct 119 GTGTTTTTGCGCACCGATCCGCGCGTGCACACCACCTTGGTGAAAGACCTAACCTCGGTG 178 Query 15577 CCGCCGTCGCCGCAGGAGTTGAACATTTTCCAGCAGGCG 15615 ||||| || |||||||| | | | |||||| ||||| Sbjct 179 CCGCCCTCACCGCAGGAACTCGATTTGTTCCAGGAGGCG 217 >seq43497 Length=1050 Score = 80.6 bits (88), Expect = 1e-10 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 18612 CGTCCGTTCACTGTTCAGCAGCTGCTTGAGATTGGTGAGCAGTTCATCGAGCAGTTTTTG 18671 || |||||||| | |||||||| ||||| | ||||| ||| ||||||||||||| || Sbjct 105 CGGCCGTTCACGGCGCAGCAGCTCATTGAGTTCGGTGAACAGCTCATCGAGCAGTTCCTG 164 Query 18672 GCGTGGGTGGTGCGCGCGGTCGCTGGGGTGTTCATCCCTGGTGAGGCATCGTTCGACCAG 18731 | | || || | || || | || |||||||| ||||| | |||||||| ||| Sbjct 165 CGGCGCGTAGTCCTGGCCGTGGTCGGCTCATTCATCCCCGGTGAAGGCTCGTTCGAGCAG 224 Query 18732 TTGCGTGATTGGGCTTTGAACATCCCCAT 18760 || || ||||| | | ||||||||| Sbjct 225 CTGGAGGAATGGGCATACAGCATCCCCAT 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181612084342000