Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028796.1 Length=49203 Score E Sequences producing significant alignments: (Bits) Value seq40065 251 2e-62 seq46163 167 7e-37 seq46136 134 4e-27 seq42164 109 2e-19 seq46043 102 3e-17 >seq40065 Length=1045 Score = 251 bits (278), Expect = 2e-62 Identities = 433/621 (70%), Gaps = 12/621 (2%) Strand=Plus/Plus Query 36522 CGCCGCCCGCTGCTCAATGGCGTGTCGACTGTGTGGGGCAATCGGCAGAAGGGCGAGATC 36581 ||||| || || ||| | ||| | ||||| || ||||| || ||| | |||||| || || Sbjct 10 CGCCGGCCACTACTCCAAGGCCTCTCGACCGTCTGGGGGAACCGGGACAAGGGCCAGGTC 69 Query 36582 ACCGCTGTCTACGACGAACTCACCGCCGACGCAGCCGACGCCTACACACGCCGCAGTGAC 36641 | || ||||| |||||||| | ||||| | | | |||||| || || | |||| Sbjct 70 AGCGTGATCTACAACGAACTCGGGACGGACGCGACGGCGGACTACACCCGTCGAAATGAC 129 Query 36642 CGCCTGATCCTGCGCTTCGTGCCGGACCCCGACTGGGCGACCATGCGTGCGA--CCGCTG 36699 || | ||| || || | ||||||| ||||| ||| || | | | |||||| Sbjct 130 GTGCTCGCCTTGCAATTTGTCGCCCACCCCGATTGGGCCACCCTG--TTCAATGCCGCTG 187 Query 36700 ACGGACAGTTCCACACCCAGGACGAGTTCGGTGACCTGATCGAAGCGGCTGGCCACCTCA 36759 |||| |||||||| | ||| || ||||| ||||||||||| ||| || ||||| | Sbjct 188 ACGGCAAGTTCCACTCTCAGCTGGATTTCGGCGACCTGATCGAGCAGGCCGGGCACCTGA 247 Query 36760 TCATTTCCCACCCCGCAGCGGAACTGATGGAGATCGTGGACAGCGTCC--GCA-CCAGTT 36816 ||| || |||| || || || | ||||||||| | |||||| ||| ||| | || Sbjct 248 TCACCTCGCACCAGGCCGCCGATGTCATGGAGATCATCGACAGCATCCGAGCATCGAG-- 305 Query 36817 CCAAAGGGTCATTCGAATCGAAGATCCGCCGCGACACGGGCAGCCAGTACCTCACCTACT 36876 ||| || |||||||| || ||| |||| ||| ||||| | |||| |||||| Sbjct 306 -CAAGGGATCATTCGAGTCAGGAATCAAGCGCGCCACCAGCAGCGTGAACCTGACCTACA 364 Query 36877 CGGAAGAGGTATCGGCGAAGGCTGGATCATCGACCAGGCCGCTGGAGGTCCCCCGTGAGA 36936 || || |||||||| ||||| || | | || ||| || ||| | || || || | Sbjct 365 GCGAGGAAGTATCGGCCAAGGCGGGCACCGCAACTCGGCAACTTGAGATACCGCGCGAAA 424 Query 36937 TCACCATGAGCGCACGGCCGTTCGAGGACTACCCGCAGGTGGAGGTGAAGTGCTGGCTGC 36996 ||||| || || || || ||||||||||||||| | ||||| ||||||| ||| Sbjct 425 TCACCTTGTCGGCCCGACCATTCGAGGACTACCCGGTCATCGAGGTTCGGTGCTGGTTGC 484 Query 36997 GGCTTCGAATCAACCAGGGCCAGTTGTACCTGGGACTGTTCCCGCAGCCCTATGAGCACC 37056 | || ||| ||||| || || || || |||||||| ||||||||| |||||| Sbjct 485 GCCTGAACATCTCGCAGGGGCAACTGGGGCTCGGCCTGTTCCCACAGCCCTATCAGCACC 544 Query 37057 GTGTGCGCGACGCCTGGGTGCACGTCACTGGGGAGCTGGCCG-AGCAGCTGGGCGTTCCG 37115 |||||||| || ||| |||||| || || |||||| ||| |||| || || || || Sbjct 545 TCGTGCGCGATGCATGGACGCACGTAACCGGCGAGCTGTCCGAAGCA-CTCGGGGTGCCC 603 Query 37116 GTGTACGCGTCGAACGTGGGC 37136 || ||||| | ||| | ||| Sbjct 604 GTCTACGCCGCCAACCTCGGC 624 >seq46163 Length=1271 Score = 167 bits (184), Expect = 7e-37 Identities = 195/261 (75%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 23056 CAACAGGGAGAACCCTATATGTCTGAATATCAAGCCGCACACCGACGGGCATGCGCATCG 23115 |||||| || ||| ||||| ||||| ||||| | |||||||| || ||| | Sbjct 209 CAACAGAAAGGCCCCCGCATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCTGCGCC 268 Query 23116 GCAATCACCGCACTCGGCAACCGAATTGGGCTCTACGCCGGTTCGACGCGCGTCGGTACC 23175 |||||||||||||||||||||||||| ||||| | ||||||||| || || || || ||| Sbjct 269 GCAATCACCGCACTCGGCAACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAGGCACC 328 Query 23176 GTGTTCGCCGACACCACCTGGGGTACAGCTGCCGACATCACCGAGGGCGGCGTCGACAAA 23235 | | ||||||||||||||||| || | | ||| ||||||| |||| ||||||| Sbjct 329 GCCTACGCCGACACCACCTGGGCCACCCCAGTCGATGTCACCGAATCCGGCATCGACAAG 388 Query 23236 GC-TCAGGTGACCGGCTCGACAGTCACAGTCACGATTCCGGGCGGCACCGTATCGAACGG 23294 || ||| ||||||||| || || || || | || ||||||||||| | ||||| Sbjct 389 GCATCA-TCCACCGGCTCGCTGGTAACCATCTCGGTACCTGGCGGCACCGTGGCCAACGG 447 Query 23295 TACGACCATCGACCGGTACGG 23315 ||| ||| |||||||||| Sbjct 448 CACGGTGATCAACCGGTACGG 468 >seq46136 Length=4795 Score = 134 bits (148), Expect = 4e-27 Identities = 192/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 11764 TGGCAGCGACTGTTCGGCACACAGTTCGAGGATCTCGGCGACGCGGTCAATCAGTTCGAC 11823 ||||| || || |||||||| |||| ||||| | ||||| || ||||| | ||||| Sbjct 800 TGGCAACGCCTTTTCGGCACGCAGTGGGAGGACATGGGCGATGCTGTCAACAAACTCGAC 741 Query 11824 CTCGACCCGGTCAAAAACGAGTTCGACGACTTGCAGGGCACCTCGGATCGTGCAACCAAG 11883 |||||||||| |||||| ||||| | || |||| | ||||||| | || | || ||| Sbjct 740 CTCGACCCGGCTAAAAACCAGTTCAAGGATCTGCAAGACACCTCGCAGCGATCGACTAAG 681 Query 11884 ACCGCGACCGACAATTTCAAATCGGACTGGGAAGAG-GCGACCCGCACCGTCGGGCAGTT 11942 |||||||| || | ||||| || || |||| |||| || ||| || |||| || | Sbjct 680 ACCGCGACGGAGACGTTCAAGTCCGAGTGGG-AGAGCGCAACCAAGACGGTCGATCAATG 622 Query 11943 CTTCTCGGACTTGAAGACCGACATCGCCGAGTGGTTCACCGACCTGCCGGTGATCCGCGA 12002 ||| | ||| | |||||| ||| | || ||||| || ||||| || ||| | || Sbjct 621 GTTCACCGACCTAAAGACCAGTATCTCGGATTGGTTTGTGGATCTGCCTGTCATCAGGGA 562 Query 12003 TATCCCGCAGTTCATCACCGACATGTTC 12030 |||||| | | |||| ||| ||||| Sbjct 561 CATCCCGACGATGATCAAGGACCTGTTC 534 >seq42164 Length=289 Score = 109 bits (120), Expect = 2e-19 Identities = 136/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 4226 TTCGATCTGTCCGTGTTCAACCATGCCGGGCGCTCACAAGCGCCAGCGCCGCGAACCCCG 4285 ||||||||||| | |||| | ||||||| ||| ||||| ||||| |||| ||| Sbjct 226 TTCGATCTGTCGGCGTTCCGCTATGCCGGACGCCAGTCCGCGCCTGCGCCACGAATTCCG 167 Query 4286 CAGGCGCACAACCAGACCCCTCAGCCTGTCGAGGCCGAGGTACGTAATGGAAAGGAGCCC 4345 | || ||||||| ||||||||| ||| | ||| |||||| | |||||||||||| Sbjct 166 CTGGTGCACAACAAGACCCCTCGGCCCGAGAAGGGCGAGGTCAACAGAGGAAAGGAGCCC 107 Query 4346 AACGTGGCAACCCTGAGTGAGAG-TGCGCTGCAGAAGCTCGGCCTCGACGCCGAAGCCGA 4404 | ||||||||||||| |||| | ||| || |||||| |||| ||||| ||||| Sbjct 106 ATTGTGGCAACCCTGAATGAGGGCCTCGC-CAAGCTGCTCGGTATCGATGCCGACGCCGA 48 Query 4405 TGAC 4408 ||| Sbjct 47 CGAC 44 >seq46043 Length=3937 Score = 102 bits (112), Expect = 3e-17 Identities = 105/136 (77%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 48238 ACCGCAG-TGCAGAGGGCCGGCCGCAAGGCCAACACGACTGACAAGGGCCTCGGCTGGCG 48296 |||||| ||| |||| ||||||| ||||||| ||| || || || || |||||| Sbjct 136 ACCGCACATGCCGAGGCCCGGCCGTAAGGCCAGCACCACCGATCGCGGTCTGGGCTGGAA 77 Query 48297 ACACCAACAGGACGCCGCCCGCCTGCTACGCCGACACGAGAACGGCACGCTCTGCTGGTG 48356 |||||||||| | |||| ||||| | ||||| |||| ||||||| || |||||||| Sbjct 76 ACACCAACAGCAAGCCGAGGGCCTGTTGCGCCGTCACGTCGACGGCACACTGTGCTGGTG 17 Query 48357 GTGCGGCCTACCGATG 48372 ||| ||||| |||||| Sbjct 16 GTGTGGCCTGCCGATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157233185297500