Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028802.1 Length=49158 Score E Sequences producing significant alignments: (Bits) Value seq46163 360 6e-95 >seq46163 Length=1271 Score = 360 bits (398), Expect = 6e-95 Identities = 390/516 (76%), Gaps = 22/516 (4%) Strand=Plus/Plus Query 4215 ATCGAAAGGAA---CAC---ATGAGTTTTCGCACCGTGTATGGGTATGAATGGTCAGAGA 4268 ||||||||||| ||| |||||||| ||||||| || || || ||| |||| Sbjct 707 ATCGAAAGGAAGTACACCCGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGA 766 Query 4269 ACGGTTGGCGCATGTGCAACCGCGACGAGTGCGACATCGTAAAGATCCCTGAGCTCTACC 4328 |||||||||| ||||||||||| ||||| |||||||||||| ||| ||||| |||| Sbjct 767 ACGGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACC 826 Query 4329 TGGTCGATACAGCCCCGCTCCGTAAGGGGGCTCCCCTGACCATCCTCGGCGCGTGGATCT 4388 | |||||||| || ||||| || ||||| || || ||||||||||||||||| ||| | | Sbjct 827 TCGTCGATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGT 886 Query 4389 ACTGGTATGACCGCAACGTCGAGGAGATCTTCACCCCGGTCTGGGGATGGTCGGCAACGA 4448 |||||||||||||||||||||| |||||| | |||| || ||||| ||||| || || | Sbjct 887 ACTGGTATGACCGCAACGTCGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCCACTA 946 Query 4449 ACGACGTT-GCCAACTCAAATCACCTGTCCGGTACCGCAGTCGACATCTGCGCTCCGAAG 4507 |||| ||| |||||| ||||||||| | || ||||| || ||| | || || ||| Sbjct 947 ACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAAG 1006 Query 4508 TACCCGTGGAAGCGGTACACGATGACAGCGGACAAAGTCGCGAAGGTCCGTCAGGGCTTG 4567 ||||| ||| |||||||||||||| || | || || |||||||| ||||| || Sbjct 1007 TACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAGGCCAAGGTCCGCAAGGGCCTG 1066 Query 4568 GACCTGTTCGAGGGCACAGTGTTCTGGGGTCGAAAGTGGGGCGAGACGGGAGTTAGCTCG 4627 | |||||||||||| | ||||||||||| || | ||| | || | Sbjct 1067 GCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGG--------------TCGCGC- 1111 Query 4628 CCCGACGAGATGCACTACCAGATGGCATTCCGAGAGGGTGACGCCCGCAACGAGGCGTTC 4687 |||||||||||||||||||||||||| | | ||||| ||| ||||| || |||||| Sbjct 1112 CCCGACGAGATGCACTACCAGATGGCCTGGCCCGAGGGCGACAAGCGCAATGACGCGTTC 1171 Query 4688 GCCAAGAAGCTCAAGGACGGATACCTCGGCATCTAC 4723 ||| ||||| | ||||||||||||||||||| Sbjct 1172 GCCGCCAAGCTGCGCGCCGGATACCTCGGCATCTAC 1207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157089272080000