Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028804.1 Length=52643 Score E Sequences producing significant alignments: (Bits) Value seq46163 224 3e-54 >seq46163 Length=1271 Score = 224 bits (248), Expect = 3e-54 Identities = 357/511 (70%), Gaps = 22/511 (4%) Strand=Plus/Plus Query 4457 GATGAGCTTCCGCGTAGTAAACGGGAACACGCACACCGAGAAGGGGTGGCGGTGCTGCAA 4516 |||||| |||||| | | |||| || ||| ||||||| || ||||| ||||| Sbjct 726 GATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATGTGCAA 785 Query 4517 CCGGGACGAGTGCGACATCGTCCGCATCCCCGGCCTGTATCTAACCGACACAGCACCCAT 4576 ||||||||| ||||||||||| |||||| || ||||| || ||| || ||||| | Sbjct 786 CCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCACCGCT 845 Query 4577 CCGTAAGGGAGCGCCGCTAACCATTCTCGGGGCGTGGCTGTACTGGTACGACCGCAACGT 4636 || ||||| || ||||| ||||| ||||| || |||||||||||||| ||||||||||| Sbjct 846 GCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGCAACGT 905 Query 4637 CGAGGAGATCGTCACCCCGATCTGGGGCTGGTCCCTTAATAACGACGTACTAGGGCAGCC 4696 ||| |||||| | |||| | ||||| ||||| | |||||| || | ||| Sbjct 906 CGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCCACTAACGATGTTC-------GCC 958 Query 4697 GGGGAAGAACAACGGGTCTAACCACCTGTCCGGGGTAGCTGTGGACGTCAACGCGCCCAA 4756 |||| ||| |||||| | || ||||| ||||| | || ||||| Sbjct 959 -------AACA------GTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAA 1005 Query 4757 GTACCCCTGGGGCACGTACCGGATGTCTGCGGACAAGATTGCCAAGGTCGAGGAAGGACT 4816 |||||||||| |||| |||| ||| | || | ||||||||| | |||| | Sbjct 1006 GTACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAGGCCAAGGTC-CGCAAGGGCC 1064 Query 4817 TCG-GCTGTTCGAAGGGACAGTCTTCTGGGGACGGCGCTGGTCAAAGCCCGACGAGATGC 4875 | | ||||||||| || | || |||||||| || |||||| ||||||||||||| Sbjct 1065 TGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGC 1124 Query 4876 ACTACGACCTCTCGTACCCCGAAGGCGACCCTCGAAACGAAGCCTTCGCGAAGAAGCTCC 4935 ||||| | | | | ||||| |||||| || || || || ||||| ||||| | Sbjct 1125 ACTACCAGATGGCCTGGCCCGAGGGCGACAAGCGCAATGACGCGTTCGCCGCCAAGCTGC 1184 Query 4936 TGGATGGGTACCTCGGGATTTACAAGCCCGC 4966 | || |||||||| || ||| |||||| Sbjct 1185 GCGCCGGATACCTCGGCATCTACGCGCCCGC 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168234551257500