Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028815.1 Length=51355 Score E Sequences producing significant alignments: (Bits) Value seq46163 223 1e-53 >seq46163 Length=1271 Score = 223 bits (246), Expect = 1e-53 Identities = 360/514 (70%), Gaps = 28/514 (5%) Strand=Plus/Plus Query 4455 GATGAGCTTCCGCGTAGTAAACGGGAACACGCACACCGAGAAGGGGTGGCGGTGCTGCAA 4514 |||||| |||||| | | |||| || ||| ||||||| || ||||| ||||| Sbjct 726 GATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATGTGCAA 785 Query 4515 CCGGGACGAGTGCGACATCGTCCGCATCCCCGGCCTGTACCTCACCGACACAGCCCCTAT 4574 ||||||||| ||||||||||| |||||| || ||||||||| ||| || || || | Sbjct 786 CCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCACCGCT 845 Query 4575 CCGTAAGGGAGCTCCGTTAACCATTCTCGGGGCGTGGCTGTACTGGTACGACCGCAACGT 4634 || ||||| || ||| | ||||| ||||| || |||||||||||||| ||||||||||| Sbjct 846 GCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGCAACGT 905 Query 4635 CGAGGAGATCGTCACCCCGATCTGGGGATGGTC--CCTAGAC-AACGACGTGCTGGGTCA 4691 ||| |||||| | |||| | ||||| ||||| || || ||||| || | Sbjct 906 CGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCC---ACTAACGATGTTC------- 955 Query 4692 GCCGGGGAAGAACAACGGGTCTAACCACCTGTCCGGGGTAGCTGTAGACGTCAACGCACC 4751 ||| |||| ||| |||||| | || ||||| ||||| | ||||| Sbjct 956 GCC-------AACA------GTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACC 1002 Query 4752 CAAGTACCCATGGGGCACGTACCGGATGTCTGCGGACAAGATTGCCAAGGTCGAGGAAGG 4811 ||||||||| ||| |||| |||| ||| | || | ||||||||| | |||| Sbjct 1003 CAAGTACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAGGCCAAGGTC-CGCAAGG 1061 Query 4812 ACTTCG-GCTGTTCGAAGGGACAGTCTTCTGGGGCCGGCGCTGGTCAAAGCCCGACGAGA 4870 | | | ||||||||| || | || ||||||||||| |||||| |||||||||| Sbjct 1062 GCCTGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGA 1121 Query 4871 TGCACTACGACCTCTCGTACCCCGAAGGCGACCCTCGAAACGAAGCCTTCGCGAAGAAGC 4930 |||||||| | | | | ||||| |||||| || || || || ||||| |||| Sbjct 1122 TGCACTACCAGATGGCCTGGCCCGAGGGCGACAAGCGCAATGACGCGTTCGCCGCCAAGC 1181 Query 4931 TCCTGGATGGGTACCTCGGGATTTACAAGCCCGC 4964 | | | || |||||||| || ||| |||||| Sbjct 1182 TGCGCGCCGGATACCTCGGCATCTACGCGCCCGC 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164115435165500