Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq46163 122 3e-23 >seq46163 Length=1271 Score = 122 bits (134), Expect = 3e-23 Identities = 199/297 (67%), Gaps = 41/297 (14%) Strand=Plus/Plus Query 23896 ATGTCGGAATATCAAGCCGCGCACCGACGTGCGTGCTGTGCGGCGGTCACGGCGCTCGGC 23955 ||||| ||||| ||||| |||||||||| || ||||| || || |||| || |||||| Sbjct 227 ATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCTGCGCCGCAATCACCGCACTCGGC 286 Query 23956 AACCGTATCGGCCTGTTCGCGGGGGCGACGCGCGTCGGCACCGTGTCTGCTGACACCACC 24015 ||||| ||||| || ||||| || | || || || ||||||| | || ||||||||| Sbjct 287 AACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAGGCACCGCCTACGCCGACACCACC 346 Query 24016 TGGGGGACGCCGGTGGACATCAACGAA-CCGGTCNNNNNNNNNNNNNNNNNNNNNNNNGT 24074 |||| || || || || ||| |||| |||| Sbjct 347 TGGGCCACCCCAGTCGATGTCACCGAATCCGG---------------------------- 378 Query 24075 CACCAACCCGAACGTCGACAAGGCGCGGGCGACCGGCTCGACGGTCACCATCACCGTCCC 24134 | |||||||||| | ||||||||| ||| |||||| | || || Sbjct 379 ------------CATCGACAAGGCATCATCCACCGGCTCGCTGGTAACCATCTCGGTACC 426 Query 24135 TGGCGGCACCGTCGCGAATGGCGCGGTGATCGACCGGTACGGGGTGTTCAACGGCGC 24191 |||||||||||| || || ||| |||||||| |||||||||| ||| | ||| |||| Sbjct 427 TGGCGGCACCGTGGCCAACGGCACGGTGATCAACCGGTACGGCGTGGTGAACCGCGC 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196595049319500