Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028842.1 Length=57328 Score E Sequences producing significant alignments: (Bits) Value seq49917 839 0.0 seq50663 509 6e-140 seq38559 307 4e-79 seq42881 107 7e-19 seq43497 82.4 3e-11 >seq49917 Length=2087 Score = 839 bits (930), Expect = 0.0 Identities = 941/1252 (75%), Gaps = 11/1252 (1%) Strand=Plus/Plus Query 15750 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAAACC 15809 || || |||| |||||||||||||| || || ||||||| ||| | || ||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15810 GCTGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCA 15869 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15870 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAACTACTACGTGATTTGG 15929 ||||| |||| | || ||||||| || | |||||||| |||||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15930 CCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 15989 ||| |||||||||| || || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15990 CTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTTTGCGGTTGCAGTCCGGGTGG 16049 || | ||| |||||||||||||||||| |||||||| |||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 16050 CTGGAGTTCATCAACAACGGACTGTCGTTAAACC---CGG--ATATCCGGGCATGGTTCG 16104 ||||||||| ||||||||| ||||| | || ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 16105 GCACCGTTCTGCAAGCCCTGTCGCGGGACGGGCTGTCGGTCCAGGCGTTCACCCGCATGC 16164 ||||| | |||||||||| ||| ||| ||| ||||| ||| | ||| | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 16165 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCGATGGTGG 16224 |||| ||||| |||||| |||||||| || | |||||||| ||||| ||| | Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 16225 CTCGCACAGTGCGGATGGAAACCGTTCAG-GCCGTCATCAAGGACGTTACCCAGTCGTAC 16283 | || || || ||||||||| | | | | ||||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 16284 GGTGTGGATACCCGCATGGATTTGTGGCTTCCAGGTGATCCGCAGCCTGGCAGGTGGGCG 16343 |||||||| ||||||||||| |||||| || ||||| ||||| || | || |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 16344 AACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGTCCG 16403 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 16404 ACGAAAACCGTGCTCGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGGG 16463 || |||||||| |||||||||| | || ||| ||||| ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 16464 GACATCTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCC 16523 ||||||||||| || |||||| ||||||| ||||| ||| |||| ||||| || || ||| Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 16524 GCGTTGGGTGTGGATTTCGAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAG 16583 | | ||||| |||||||||||||| |||||||| |||| |||||||| ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 16584 GACACCGGCATCGATGCGTGCACGATCACTGACCACACACCTGAGGGTTGGCAGCACATT 16643 ||| || |||| ||| ||| | |||||||| || ||||| ||||| ||||| Sbjct 906 GACTCCAACATCATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACATC 965 Query 16644 ATTGGTGGCCGTAGCCCAAAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCTG 16703 || || |||||| |||||||||||||||||||| |||||||||||||||||| || | Sbjct 966 ATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTGG 1025 Query 16704 ATCGACTCGCTGATGATCGTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16763 || | |||||||||||||| || || ||| ||||||| ||||| |||||||| ||||| Sbjct 1026 ATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGGA 1085 Query 16764 TTCCTGAACAACAGCTTCCTGGCTTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 16823 ||||||||||||||||||||||| |||||| || | ||| ||| | ||| ||||| Sbjct 1086 TTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGAG 1145 Query 16824 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCATCAGCG--CCGTACA 16881 || ||||| | ||||||||||||||||||||||| ||||| || ||||| ||||||| Sbjct 1146 GTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGC--CAGCGCCCCGTACA 1203 Query 16882 ACATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGG 16941 |||||||||| ||||||| ||||||||||| | || ||| | || || || |||| Sbjct 1204 ACATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGG 1263 Query 16942 CGACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTT 16993 || ||| ||||||||||||| ||| ||||| || || || ||| |||| Sbjct 1264 CGCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 509 bits (564), Expect = 6e-140 Identities = 480/609 (79%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 16482 ATCAAGCAGGTTCCCGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTC 16541 || ||||| | |||||||||||||| |||||||| ||||| | |||||| | ||| Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 16542 GAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAGGACACCGGCATCGATGCG 16601 ||||| || ||||||||| | || || || || | ||||||||| | |||| || Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 16602 TGCACGATCACTGACCACACACCTGAGGGTTGGCAGCACATTATTGGTGGCCGTAGCCCA 16661 ||| |||||| |||| || || ||||||||||||||||| || |||||||||||||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 16662 AAGTGGTTGAACGACTTGATGAATGCCACCTTCGCATGGCTGATCGACTCGCTGATGATC 16721 ||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16722 GTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGGTTCCTGAACAACAGCTTC 16781 || || || ||| |||| || || || || ||||| || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16782 CTGGCTTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 16841 ||||| |||||| | | ||||| |||||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16842 GCGATCGAGCGGTTCTATCCGACAGCATCAGCGCCGTACAACATCGAAACGGTGTTCGCA 16901 ||| ||||||| |||||||| || |||||||| || |||||||||||||| || ||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16902 TTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGCAAC 16961 |||||||||||| | |||||||| |||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16962 GGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 17020 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 17021 CATGTCACGTACCCGAATGGTGACTGACTACATCGAAAACGTCATGTGGCGGGTTTCCCA 17080 || | | || ||| ||||| || ||||||||||| |||||||||||||| | | | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 17081 GGATGAGCG 17089 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 174 bits (192), Expect = 6e-39 Identities = 205/275 (75%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 16038 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGACTGTCGTTAAACCCGGATATCCGGGCA 16097 ||||| |||||| |||| ||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 16098 TGGTTCGGCACCGTTCTGCAAGCCCTGTCGCGGGACGGGCTGTCGGTCCAGGCGTTCACC 16157 |||||||||||| | |||||||||||| || || || |||||| | || | ||| | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 16158 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCG 16217 |||||||| || || || |||||| || ||||| || | |||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 16218 ATG-GTGGCTCGCACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCA 16276 || ||| | | || || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAG-ACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCG 1132 Query 16277 GTCGTACGGTGTGGATACCCGCATGGATTTGTGGC 16311 | |||||||| |||||||| |||||| |||||| Sbjct 1133 AGCCTACGGTGTAGATACCCGTATGGATCTGTGGC 1167 Score = 136 bits (150), Expect = 1e-27 Identities = 206/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 15681 ATCGAGGCGTCGGGTGCTGACCCGCGAAACGATGTTGAAACCGGCCGGATCGTCCTCAAA 15740 || ||||||||||| | || || || || || |||| ||||||| | ||| Sbjct 524 ATGGAGGCGTCGGGGACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAG 583 Query 15741 GGGAACAGCCCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATC 15800 || | ||||||||| | | |||||||||||||| || |||||||| || | Sbjct 584 GGTGATAGCCCTCTCGTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAG 643 Query 15801 GTCGAAACCGCTGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGT 15860 || || ||||| || ||||| | |||||| || || ||| || ||||||| Sbjct 644 GTAGAGACCGCGGGGCTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAA 703 Query 15861 GACAGCGCATGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAACTACTAC 15920 ||| |||| ||||| || || | ||| || |||||| | ||||| |||||||| ||| Sbjct 704 GACGGCGCTTGGACGGGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTAC 763 Query 15921 GTGATTTGGCCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGC 15973 ||||| |||||||| |||||||| || ||||| | |||||| || ||||| Sbjct 764 GTGATATGGCCGTCATGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 307 bits (340), Expect = 4e-79 Identities = 291/369 (79%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16704 ATCGACTCGCTGATGATCGTTGTTGGATTCACCGGCATACCGTCCGATCTGCTGTCGGGG 16763 ||||| ||||||||||||| || || ||| |||| || || || || ||||| || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16764 TTCCTGAACAACAGCTTCCTGGCTTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 16823 ||||||||||||||||||||||| |||||| | || ||||| |||||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16824 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCATCAGCGCCGTACAAC 16883 || ||||| ||||| || ||| ||||||| |||||||| || |||||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16884 ATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCG 16943 |||||||| || ||||| |||||||||||| | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16944 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGC 17003 || ||||||||| |||| ||| || || ||||| | |||||||| ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 17004 CTGATGTCGCTGGTGT-TCATGTCACGTACCCGAATGGTGACTGACTACATCGAAAACGT 17062 |||||||| | || | || | | || ||| ||||| || |||||| |||| ||||| Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 17063 CATGTGGCG 17071 ||||||||| Sbjct 748 CATGTGGCG 756 Score = 143 bits (158), Expect = 1e-29 Identities = 211/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 16314 CCAGGTGATCCGCAGCCTGGCAGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 16373 || |||||| |||||| | |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 16374 ACAGTGGACCGGTCGCAGATCACTGGTCCGACGAAAACCGTGCTCGATTCGGTGCTGCGC 16433 || || ||||| || ||| || || || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 16434 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 16493 || | ||||| || || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 16494 CCCGGCATGGACGGCGTGTTTTATGCGCCCGCGTTGGGTGTGGATTTCGAGCAGCCATAC 16553 |||||||||||||| ||||| || ||||| | |||||| | |||||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 16554 GCCTATTTCGTGGCCCCCGAGCCGGGTGAGGACACCGGCATCGATGCGTGCACGATCAC 16612 |||||| | || || || || | ||||||||| | |||| ||||| |||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCGTGCCGGATCAC 299 >seq42881 Length=1721 Score = 107 bits (118), Expect = 7e-19 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 12323 TGGGGCAGATCGGTGCCCAGCTTGATCAGGATTTCGGTATCTCGAAGGGTTTGGCGGGGA 12382 ||||| |||| || ||| |||| ||| || ||||| ||| ||||| | | || Sbjct 1488 TGGGGGAGATTGGCGCCAAGCTGGATGCCGACTTCGGCGCCTCCAAGGGCCTCGGTGGAC 1547 Query 12383 TCGCGGAGAACATCACGAAGTTCGTGGCGAACCTCGCTGCGGCACCGTTGTTGGGGCAGT 12442 | || ||||| | ||||||||||| ||||| ||||| || ||| || | |||||| Sbjct 1548 TTGCCGAGAATCTAACGAAGTTCGTCGCGAATCTCGCGTTCGCGCCGATGCTTGGGCAGC 1607 Query 12443 TGCAG-GCCATTTCGGCCTATAACCCGACCCAGGGCGGGCACGGGTTGATGGGTGTGCTC 12501 | ||| || || ||| ||||| || ||||||| ||||| ||||||| | ||| Sbjct 1608 T-CAGCGCTATAAGCGCCGCCAACCCCTCCAAGGGCGGATACGGGATGATGGGCATCCTC 1666 Query 12502 GGCGCGCAGGGAGTGTTCGGGCCGCAGT 12529 || |||||||| || ||||||||||||| Sbjct 1667 GGGGCGCAGGGTGTATTCGGGCCGCAGT 1694 >seq43497 Length=1050 Score = 82.4 bits (90), Expect = 3e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 18185 CGTCCGTTCACTGTTCAGCAGCTGCTTGAGATTGGTGAGCAGTTCATCGAGCAGTTTTTG 18244 || |||||||| | |||||||| ||||| | ||||| ||| ||||||||||||| || Sbjct 105 CGGCCGTTCACGGCGCAGCAGCTCATTGAGTTCGGTGAACAGCTCATCGAGCAGTTCCTG 164 Query 18245 GCGTGGGTGGTGCGCGCGGTCGCTGGGGTGTTCATCCCTGGTGAGGCGTCGTTCGATCAG 18304 | | || || | || || | || |||||||| ||||| | |||||||| ||| Sbjct 165 CGGCGCGTAGTCCTGGCCGTGGTCGGCTCATTCATCCCCGGTGAAGGCTCGTTCGAGCAG 224 Query 18305 TTGCGTGATTGGGCTTTGAACATCCCCATTCTCGGGGACATCA 18347 || || ||||| | | ||||||||| | || |||||| Sbjct 225 CTGGAGGAATGGGCATACAGCATCCCCATCATAGGCCACATCA 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183217516235000