Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028844.1 Length=57293 Score E Sequences producing significant alignments: (Bits) Value seq49917 782 0.0 seq50663 491 2e-134 seq38559 304 5e-78 seq43497 95.1 4e-15 seq39852 86.0 2e-12 >seq49917 Length=2087 Score = 782 bits (866), Expect = 0.0 Identities = 927/1251 (74%), Gaps = 9/1251 (1%) Strand=Plus/Plus Query 15559 CCCCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACC 15618 || || |||| |||||||||||||| || || ||||||| ||| | |||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15619 GCGGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCA 15678 || || || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15679 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAAATACTACGTGATTTGG 15738 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15739 CCGTCGTGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCGCACGCGGTGTTCGTGTGGGCG 15798 ||| |||||||||| || || || ||||| | |||||||| | ||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15799 TTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15858 | | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15859 CTGGAGTTCATCAACAACGGCTTGTCGTT-----GAACCCGGATGTGCGGGCATGGTTCG 15913 ||||||||| ||||||||| | |||| | |||| || | ||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15914 GCACTGTGTTGCAGGCGTTGTCGCGTGATGGGTTGTCGGTGCAGGCGTTTACCCGCATGC 15973 |||| | ||||| || | ||| || | | ||||||||| | || | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15974 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCGATGGTCG 16033 |||| ||||| |||||| |||||||| ||||| ||||||| ||||| ||| || Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 16034 CGCGGACAGTGCGGATGGAAACCGTTCAGGCCG-TCATCAAAGATGTGACCCAGTCGTAC 16092 | ||| || || ||||||||| | | | || ||||||| ||||| |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 16093 GGTGTGGATACGCGCATGGATTTGTGGCTGCCGGGTGATCCGCAGCCTGACCGGTGGGCG 16152 |||||||| || |||||||| |||||| |||||||| ||||| || ||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 16153 AACCTGGACCAACCGACCTACGTGTTCTCCACAGTGGACCGGTCGCAGATCACTGGCCCG 16212 ||||| || || ||||||||||| ||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 16213 ACGAAAACGGTGCTGGATTCGGTGCTGCGCACCACGATTGACTTGGGCGGGTCGCTGGGG 16272 || ||||| || ||||||||| | || ||| ||| | ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 16273 GACATCTTCAAACCTGTCATCAAGCAGGTCCCCGGCATGGATGGCGTGTTTTATGCGCCG 16332 ||||||||||| || |||||| ||||||| ||||| ||| | || ||||| || || || Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 16333 GCGCTGGGTGTGGATTTTGAGCAGCCGTACGCGTATTTCGTGGCCCCTGAGCCGGGTGAG 16392 ||| ||||| ||||| |||||||| ||||| || |||| ||||| || ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 16393 GACACCGGCATCGATGCA-TGCACGATCACTGACCACACACCCGAGGGTTGGCAGCACAT 16451 ||| || |||| || | ||| ||| | |||||||| |||||||| ||||| ||||| Sbjct 906 GACTCCAACATC-ATCAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACAT 964 Query 16452 CATTGGTGGGCGTTCCCCAAAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCT 16511 ||| || || ||||| |||||||||||||||||| | |||||||||||||||||| || Sbjct 965 CATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGTG 1024 Query 16512 AATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGG 16571 || | |||||||||||||| ||||| ||| ||||||| ||||| |||||| | ||||| Sbjct 1025 GATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGGG 1084 Query 16572 GTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGA 16631 |||||||||||||||||||||||||||||| || | || ||| | ||| ||||| Sbjct 1085 ATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACGA 1144 Query 16632 CGTTGGCCCGTACCACCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 16691 || ||||| | || |||||||||||||||||||| ||||| ||| || |||||||| Sbjct 1145 GGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGCCAGCGCCCCGTACAA 1204 Query 16692 CATCGAAACGGTGTTCGCGTTCATCAACGCTTTGTTTGATTCACAGGGCAAGACGACGGC 16751 ||||||||| ||||||||||||||||||| | || ||| | || || || ||||| Sbjct 1205 CATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCACGGC 1264 Query 16752 GACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGGCGTGACGTTTT 16802 | ||| ||||| ||||||| ||| ||||| || || || ||| |||| Sbjct 1265 GCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 491 bits (544), Expect = 2e-134 Identities = 476/609 (78%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 16291 ATCAAGCAGGTCCCCGGCATGGATGGCGTGTTTTATGCGCCGGCGCTGGGTGTGGATTTT 16350 || ||||| | |||||||||||| || |||||||| |||||| || |||||| | || Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 16351 GAGCAGCCGTACGCGTATTTCGTGGCCCCTGAGCCGGGTGAGGACACCGGCATCGATGCA 16410 ||||| || ||||| ||| | || || || || | ||||||||| | |||| | Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 16411 TGCACGATCACTGACCACACACCCGAGGGTTGGCAGCACATCATTGGTGGGCGTTCCCCA 16470 ||| |||||| |||| || ||||||||||||||||||||||| ||||| ||| ||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 16471 AAGTGGTTGAACGACCTGATGAATGCCACCTTCGCATGGCTAATCGACTCGCTGATGATC 16530 ||||||||||||||| ||||||||||||| ||||| ||| | ||||| |||||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16531 GTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGGGTTCCTGAACAACAGCTTC 16590 || ||||| ||| |||| || || || || ||| | || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16591 CTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGACGTTGGCCCGTACCACCCG 16650 ||||| |||||| | | || ||||||||||| || ||||| || ||||| |||||||| Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16651 GCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAACATCGAAACGGTGTTCGCG 16710 ||| ||||||| |||||||| || || ||||| || |||||||||||||| || |||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16711 TTCATCAACGCTTTGTTTGATTCACAGGGCAAGACGACGGCGACGGTGCAGTTCCGTAAC 16770 ||||||||||| | ||||||||||||||| | || || || || |||||| || Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16771 GGTGCCCAGTATGCGTTGGGGCGTGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 16829 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16830 CATGTCGCGTACCCGCATGGTGACTGACTACATCGAGAACGTGATGTGGCGGGTTACCCA 16889 || | | || ||| ||||| || ||||||||||||||||| |||||||| | || | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16890 GGATGAGCG 16898 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 143 bits (158), Expect = 1e-29 Identities = 202/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 15847 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCTTGTCGTTGAACCCGGATGTGCGGGCA 15906 ||||| |||||| |||| ||| |||||||| | ||||||||||| || | || ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15907 TGGTTCGGCACTGTGTTGCAGGCGTTGTCGCGTGATGGGTTGTCGGTGCAGGCGTTTACC 15966 ||||||||||| | |||| || || || ||||| ||||| | || | || | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15967 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCGTTGTTGGACACGTCGCCG 16026 |||||||| || || || |||||| || ||||| ||||| ||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 16027 ATGGTCGCGCGGACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAAGATGTGACCCAG 16086 || || ||| || || ||||| |||||| | || ||||| ||||| || | Sbjct 1074 TTGTGTGCCAAGACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCGA 1133 Query 16087 TCGTACGGTGTGGATACGCGCATGGATTTGTGGCTGCCGGGTGA 16130 | |||||||| ||||| || |||||| |||||| ||| || || Sbjct 1134 GCCTACGGTGTAGATACCCGTATGGATCTGTGGCGGCCCGGGGA 1177 Score = 136 bits (150), Expect = 1e-27 Identities = 233/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 15445 TGCGACAAGTTTTGGCAGCCGATGGGCGCGGTTGGTGGCGATCTGATCGAGGCGTCGGGT 15504 |||| |||||| ||| || ||||| | || ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 15505 GCTGACCCGCGCAACGATGTGGAAACCGGCCGGATCGTACTCAAAGGGAACAGTCCCCTC 15564 | || || || || || |||| ||||||| | ||| || | || || ||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15565 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACCGCGGGT 15624 | | |||||||||||||| || |||||||| || | || ||||||||||| Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15625 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGTGACAGCGCATGGACC 15684 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15685 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAAATACTACGTGATTTGGCCGTCG 15744 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15745 TGGTGGCTGCCGATTCAGGCGCAGCCGTTCTCGCACGC 15782 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 304 bits (336), Expect = 5e-78 Identities = 291/370 (79%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 16512 AATCGACTCGCTGATGATCGTCGTCGGATTCACCGGCATACCGTCCGATCTGTTGTCGGG 16571 |||||| ||||||||||||| ||||| ||| |||| || || || || ||| | || || Sbjct 388 AATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGG 447 Query 16572 GTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAACACTACGACCGCCGTGACGA 16631 ||||||||||||||||||||||| |||||| | || || ||||||||||| || ||||| Sbjct 448 CTTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGA 507 Query 16632 CGTTGGCCCGTACCACCCGGCGATCGAGCGGTTCTATCCGACAGCCTCAGCGCCGTACAA 16691 || ||||| |||||||| ||| ||||||| |||||||| || || ||||| || ||||| Sbjct 508 AGTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAA 567 Query 16692 CATCGAAACGGTGTTCGCGTTCATCAACGCTTTGTTTGATTCACAGGGCAAGACGACGGC 16751 ||||||||| || ||||||||||||||||| | ||||||||||||||| | || || || Sbjct 568 CATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGC 627 Query 16752 GACGGTGCAGTTCCGTAACGGTGCCCAGTATGCGTTGGGGCGTGACGTTTTTCGCGGCGG 16811 || |||||| || |||| ||| || || ||||| | |||||||| ||||| Sbjct 628 ACAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGG 687 Query 16812 CCTGATGTCGCTGGTGT-TCATGTCGCGTACCCGCATGGTGACTGACTACATCGAGAACG 16870 |||||||| | || | || | | || ||| ||||| || |||||| ||||||||| Sbjct 688 ATTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACG 746 Query 16871 TGATGTGGCG 16880 | |||||||| Sbjct 747 TCATGTGGCG 756 Score = 154 bits (170), Expect = 5e-33 Identities = 198/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16123 CCGGGTGATCCGCAGCCTGACCGGTGGGCGAACCTGGACCAACCGACCTACGTGTTCTCC 16182 || |||||| |||||| || | |||| | ||| || ||||| || || || || || Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 16183 ACAGTGGACCGGTCGCAGATCACTGGCCCGACGAAAACGGTGCTGGATTCGGTGCTGCGC 16242 || || ||||| || ||| ||||| || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 16243 ACCACGATTGACTTGGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTC 16302 || | ||| |||| || ||||| || | |||||||| || ||||| ||||| ||| Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 16303 CCCGGCATGGATGGCGTGTTTTATGCGCCGGCGCTGGGTGTGGATTTTGAGCAGCCGTAC 16362 ||||||||||| || ||||| || |||||| || |||||| | || ||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 16363 GCGTATTTCGTGGCCCCTGAGCCGGGTGAGGAC 16395 || ||| | || || || || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq43497 Length=1050 Score = 95.1 bits (104), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 17925 CCGGAGTGGGCTCATGCGGTGCCGTCTGAGCCGGGTATTCACCCGGAGCAGTCGGCGTTG 17984 || || ||||| || ||| | ||||||| || | | || | ||||||| | | || Sbjct 42 CCCGAATGGGCGCAGGCGATCCCGTCTGCCCCAG---TCCATCAGGAGCAGCC--CAATG 96 Query 17985 CAGTGGCAGCGTCCGTTCACTGTTCAGCAGCTGCTTGAGATTGGTGAGCAGTTCATCGAG 18044 || || || |||||||| | |||||||| ||||| | ||||| ||| |||||||| Sbjct 97 AGCTGACA-CGGCCGTTCACGGCGCAGCAGCTCATTGAGTTCGGTGAACAGCTCATCGAG 155 Query 18045 CAGTTTTTGGCGTGGGTGGTGCGCGCGGTCGCTGGGGTGTTCATCCCTGGTGAGGCGTCG 18104 ||||| || | | || || | || || | || |||||||| ||||| | ||| Sbjct 156 CAGTTCCTGCGGCGCGTAGTCCTGGCCGTGGTCGGCTCATTCATCCCCGGTGAAGGCTCG 215 Query 18105 TTCGACCAGTTGCGTGATTGGGCATTGAACATCCCCATCCTCGGGGACATCA 18156 ||||| ||| || || ||||||| | |||||||||| | || |||||| Sbjct 216 TTCGAGCAGCTGGAGGAATGGGCATACAGCATCCCCATCATAGGCCACATCA 267 >seq39852 Length=3441 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 35284 CAGTCCGACTTCCTCGTCACTCGGTTCGCGGCATACCTGATCGCAATGAACGGCGATCCA 35343 ||| | |||| || | || | |||| ||| || || ||||| | || ||||||||| Sbjct 1321 CAGGCTGACTACCACCTCTCCCGGTACGCCTGCTATCTCGTCGCACTCAATGGCGATCCA 1380 Query 35344 CGCAAACCGGAAGTGTCGGCCGCACAGGAGTACTTCGCCGTCAAGACCCGTGAGGCCGAG 35403 ||||| || ||| | | ||||| ||| ||||||| | |||||||||||||||||||| Sbjct 1381 CGCAAGCCTGAAATCGCAGCCGCGCAGACATACTTCGTCATCAAGACCCGTGAGGCCGAG 1440 Query 35404 AC 35405 || Sbjct 1441 AC 1442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183105583732500