Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028860.1 Length=52392 Score E Sequences producing significant alignments: (Bits) Value seq46163 282 1e-71 >seq46163 Length=1271 Score = 282 bits (312), Expect = 1e-71 Identities = 397/553 (72%), Gaps = 47/553 (8%) Strand=Plus/Plus Query 4179 ATCGAAAGGAC---CAC---ATGAGTTTTCGCAATGTGTACGG--ATACGACTGGTCGGA 4230 |||||||||| ||| |||||||| |||| | ||||| ||||| ||| || Sbjct 707 ATCGAAAGGAAGTACACCCGATGAGTTTCCGCACCGCATACGGCAATACGGT--GTCCGA 764 Query 4231 AAACGGCTGGCGCATGTGCAACCGGGACGAGTGCGACATCGTCCGCATTCCCGAGCTGTA 4290 ||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||||| Sbjct 765 GAACGGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTA 824 Query 4291 CCTGACCGAGACTGCCCCGATACGCAAGGGCGCCCCGCTGACCATCCTCGGCGCGTGGAT 4350 ||| ||| || || ||| | |||||||||||||||||||||||||||||||| ||| | Sbjct 825 CCTCGTCGATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCT 884 Query 4351 GTACTGGTATGACCGCAACGTCGAGGAGATCCTGACCTCGATCTGGGGCTGGTCGGCCGG 4410 |||||||||||||||||||||||| |||||| || | | ||||| ||||| ||| Sbjct 885 GTACTGGTATGACCGCAACGTCGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCCAC 944 Query 4411 CAACGACGTT-GCCAACTCGAATCACCTGAGCGGCACCGCAATTGACCTGTGCGCGCCCA 4469 ||||| ||| |||||| ||||||||| |||||||| ||||| || || |||| Sbjct 945 TAACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCA 1004 Query 4470 AGTACCCCTGG----GG--CTCGAAGGTCATGCCAGCAGCCAAGGTGAACAAGGTCATCG 4523 ||||||||||| || | ||| || ||||| |||| | | ||||||| | Sbjct 1005 AGTACCCCTGGCAGCGGTACACGATGG--ATGCC----GCCACGCAGGCCAAGGTCCGCA 1058 Query 4524 AAGGTCTCAAGCTCTTCTCACTTGACGGCACGGCAGAGAACAGCCTGGTCTTCTGGGGAC 4583 | || || ||| ||| || ||| | ||| |||||||| | Sbjct 1059 AGGGCCTGGCGCTGTTC------GAGGGCTC---------------GGTGTTCTGGGGCC 1097 Query 4584 GCACCTGGAGCAAGCCCGACGAGATGCACTACCAGATGCACTTTCGGGAGGGTGACCCGC 4643 || |||| |||||||||||||||||||||||| || | ||||| ||| || Sbjct 1098 GCGACTGGTCGCGCCCCGACGAGATGCACTACCAGATGGCCTGGCCCGAGGGCGACAAGC 1157 Query 4644 GCAACGATCAGTTCGCACAGAAGCTCCGTGACGGGTACCTCGGCATCTACAAGTCCGC-- 4701 |||| || |||||| ||||| || | ||| ||||||||||||||| | |||| Sbjct 1158 GCAATGACGCGTTCGCCGCCAAGCTGCGCGCCGGATACCTCGGCATCTACGCGCCCGCGC 1217 Query 4702 -ACCCCCGGTGGT 4713 ||||||| ||| Sbjct 1218 AGCCCCCGGCGGT 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167431835311000