Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028897.1 Length=49421 Score E Sequences producing significant alignments: (Bits) Value seq46163 385 2e-102 >seq46163 Length=1271 Score = 385 bits (426), Expect = 2e-102 Identities = 400/518 (77%), Gaps = 26/518 (5%) Strand=Plus/Plus Query 4250 ATCGAAAGGAA---CAC---ATGAGTTTTCGCACCGTGTACGGGTATGACTG-GTCCGAG 4302 ||||||||||| ||| |||||||| ||||||| ||||| || || | ||||||| Sbjct 707 ATCGAAAGGAAGTACACCCGATGAGTTTCCGCACCGCATACGGCAAT-ACGGTGTCCGAG 765 Query 4303 AACGGTTGGCGCATGTGCAACCGCGACGAGTGCGACATCGTCAAGC-TCCCTGAGCTATA 4361 ||||||||||| ||||||||||| ||||| ||||||||||| | || || ||||| || Sbjct 766 AACGGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGT-ACGCATCGACGAGCTGTA 824 Query 4362 CCTGGTCGATACCGCCCCGCTCCGTAAAGGCGCTCCCCTGACCATCCTCGGCGCGTGGAT 4421 ||| ||||||||||| ||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 825 CCTCGTCGATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCT 884 Query 4422 CTACTGGTATGACCGCAACGTCGAGGAGATCTTCACCCCGGTCTGGGGATGGTCGGCAAC 4481 ||||||||||||||||||||||| |||||| | |||| || ||||| ||||| || || Sbjct 885 GTACTGGTATGACCGCAACGTCGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCCAC 944 Query 4482 GAACGACG-TCGCCAACTCAAATCACTTGTCTGGCACCGCAGTTGACATCTGCGCGCCTA 4540 ||||| | |||||||| |||||| || | |||||||| |||||| | || || | Sbjct 945 TAACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCA 1004 Query 4541 AGTACCCGTGGAAGCGGTACACGATGACAGCGGACAAGATCGCAAAGGTCCGTCAGGGCC 4600 ||||||| ||| |||||||||||||| || | || | || |||||||| |||||| Sbjct 1005 AGTACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAGGCCAAGGTCCGCAAGGGCC 1064 Query 4601 TGGATCTGTTCGAGGGAACGGTGTTCTGGGGTCGAAAGTGGGGCGAGACGGGAGTCGGCT 4660 ||| ||||||||||| ||||||||||||| || | || |||| Sbjct 1065 TGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTG-------------GTCG--C 1109 Query 4661 CCCCCGACGAGATGCACTACCAGATGGCATTCCGAGAGGGCGACGCCCGCAACGAGGCGT 4720 ||||||||||||||||||||||||||| | | ||||||||| ||||| || |||| Sbjct 1110 GCCCCGACGAGATGCACTACCAGATGGCCTGGCCCGAGGGCGACAAGCGCAATGACGCGT 1169 Query 4721 TCGCCAAGAAGCTCAAGGACGGCTACCTCGGCATCTAC 4758 ||||| ||||| | ||| ||||||||||||||| Sbjct 1170 TCGCCGCCAAGCTGCGCGCCGGATACCTCGGCATCTAC 1207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157930364884500