Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028910.1 Length=55617 Score E Sequences producing significant alignments: (Bits) Value seq49917 805 0.0 seq50663 461 3e-125 seq38559 284 4e-72 seq43497 84.2 8e-12 >seq49917 Length=2087 Score = 805 bits (892), Expect = 0.0 Identities = 937/1254 (75%), Gaps = 15/1254 (1%) Strand=Plus/Plus Query 15061 CCTCTCATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACA 15120 || || |||| |||||||||||||| || || ||||||| ||| | ||||| Sbjct 67 CCACTGATCCAGATGTTCATGGACTGCCGCAACACCCTGGTCGGGGTCGAGATGGAGACC 126 Query 15121 GCCGGTTTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCA 15180 ||||| || | |||||||| ||| ||| |||| ||| | |||| Sbjct 127 GCCGGCAGCCGACAGAACTTCTACACCAAGGTTCACCGCTACCGCTACGAAAAGGGCGCG 186 Query 15181 TGGACCGGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGG 15240 ||||| |||| | || ||||||| || | |||||||| || ||||||||||| ||| Sbjct 187 TGGACAGGCAATGTCGAGATGCGCGGCATTTGGGACATCCTGAACTACTACGTGATCTGG 246 Query 15241 CCGTCGTGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGCGATCTTCGTGTGGGCG 15300 ||| |||||||||| || || || ||||| | |||||||| |||||| | |||||| Sbjct 247 CCGACGTGGTGGCTTCCCCTTGCCGCCCAGCCCATTTCGCACGCAATCTTCATCTGGGCG 306 Query 15301 CTGCAAACCGTCGTGGAGAACATGGTCGCAGAATGCGCTCTGCGGTTGCAGTCCGGGTGG 15360 || | ||| |||||||||||||||||| |||||||| ||||| | |||||||||||| Sbjct 307 CTACCGACCTGCGTGGAGAACATGGTCGCCGAATGCGCGCTGCGCATCCAGTCCGGGTGG 366 Query 15361 CTGGAGTTCATCAACAACGGCCTGTCGTTAAACC---CGG--ATATCCGGGCATGGTTCG 15415 ||||||||| ||||||||| |||||| | || ||| | |||||||||||| | | Sbjct 367 CTGGAGTTCGTCAACAACGCCCTGTCCCTCCACGGAACGGCGACATCCGGGCATGGATGG 426 Query 15416 GCACCGTTCTGCAAGCCCTGTCGCGGGACGGGCTGTCGGTCCAGGCGTTCACCCGCATGC 15475 ||||| | |||||||||| ||| ||| ||| ||||| ||| | ||| | |||| Sbjct 427 GCACCATCTTGCAAGCCCTCAAGCGCGACAAGCTCTCGGTGCAGACCTTCGGCAAGATGC 486 Query 15476 TGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCGATGGTGG 15535 |||| ||||| |||||| |||||||| || | |||||||| ||||| ||| | Sbjct 487 TGCGCACCCCCACCTATGTGCAGCGCACCAACCCGTTCCTGGACACATCGCCCATGTGCG 546 Query 15536 CTCGCACAGTGCGGATGGAAACCGTTCAG-GCCGTCATCAAGGACGTTACCCAGTCGTAC 15594 | || || || ||||||||| | | | | ||||||||||| || |||| | ||| Sbjct 547 CCAAGACCGTTCGCATGGAAACC-TGCGGAACGGTCATCAAGGATGTCACCCGCGCCTAC 605 Query 15595 GGTGTGGATACCCGCATGGATTTGTGGCTTCCAGGTGATCCGCAGCCTGACAGGTGGGCG 15654 |||||||| ||||||||||| |||||| || ||||| ||||| || |||| |||||| Sbjct 606 GGTGTGGACACCCGCATGGACCTGTGGCGCCCGGGTGACCCGCAACCGGACAAGTGGGCC 665 Query 15655 AACCTGGACCAGCCTACCTACGTGTTTTCCACAGTGGACCGGTCGCAGATCACTGGTCCG 15714 ||||| || ||| ||||||||||||||||| |||||| ||||||| | || || Sbjct 666 AACCTCGATTCGCCCACCTACGTGTTTTCCACCCGGGACCGCCAGCAGATCTCGGGGCCC 725 Query 15715 ACGAAAACCGTGCTCGATTCGGTGCTGCGCACCACGATTGACCTTGGCGGGTCGCTGGGG 15774 || |||||||| |||||||||| | || ||| ||||| ||||| || || || Sbjct 726 ACCAAAACCGTTGCCGATTCGGTGATCAAGACGGTGATCGACCTCGGCGGATCACTCGGT 785 Query 15775 GACATCTTCAAACCTGTCATCAAGCAGGTTCCCGGCATGGACGGCGTGTTCTATGCGCCC 15834 ||||||||||| || |||||| ||||||| ||||| ||| |||| |||||||| || ||| Sbjct 786 GACATCTTCAAGCCAGTCATCCAGCAGGTACCCGGTATGAACGGGGTGTTCTACGCCCCC 845 Query 15835 GCGGTGGGTGTGGATTTCGAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAG 15894 | | ||||| |||||||||||||| |||||||| |||| |||||||| ||| ||| Sbjct 846 AAGCTCGGTGTCGATTTCGAGCAGCCCTACGCCTACGTCGTCGCCCCCGAAGAGGGCGAG 905 Query 15895 GACACCGGTATTGATGCGTGTTCG--ATCACTGACCACACACCTGAGGGTTGGCAGCACA 15952 ||| || | | || | | || ||| | |||||||| || ||||| ||||| |||| Sbjct 906 GACTCCAACA-TCAT-CAACTGCGAAATCGCCGACCACACCCCCGAGGGCTGGCAACACA 963 Query 15953 TCATCGGTGGGCGCAGCCCAAAGTGGTTGAATGACCTGATGAACGCCACCTTCGCGTGGC 16012 ||||||| || || |||||||||||||| ||| | ||||| ||||||||||| || Sbjct 964 TCATCGGCGGCCGTTCTCCAAAGTGGTTGAACGACTTAATGAATGCCACCTTCGCAGGGT 1023 Query 16013 TGATCGACTCACTGATGATCGTTGTTGGATTCACTGGCATACCCAGTGATCTTCTGTCGG 16072 ||| | || ||||||||||| || || ||| | ||||| || ||||| || |||| Sbjct 1024 GGATGTATTCGCTGATGATCGTGGTCGGGTTCTCCGGCATCCCGTCGGATCTGCTCTCGG 1083 Query 16073 GTTTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACG 16132 | |||||||||||||||||||||||||||||| || | ||| ||| | ||| |||| Sbjct 1084 GATTCCTGAACAACAGCTTCCTGGCGTTCCAGATGGTCCAGGTGTACCAGGTCCGCGACG 1143 Query 16133 AAGTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCATCAGCG--CCGTA 16190 | || ||||| | ||||||||||||||||||||||| ||||| || ||||| ||||| Sbjct 1144 AGGTGGGCCCTTTTCATCCGGCGATCGAGCGGTTCTACCCGACCGC--CAGCGCCCCGTA 1201 Query 16191 CAACATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGAC 16250 |||||||||||| ||||||| ||||||||||| | || ||| | || || || || Sbjct 1202 CAACATCGAAACCATGTTCGCGTTCATCAACGCGATTTTCGATGCCCAAGGTGCTACCAC 1261 Query 16251 GGCGACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTT 16304 |||| ||| ||||||||||||| ||| ||||| || || || ||| |||| Sbjct 1262 GGCGCAGGTCACTTTCCGCAACGGTGACCAATATGCCTTAGGCCGAGACATTTT 1315 >seq50663 Length=1982 Score = 461 bits (510), Expect = 3e-125 Identities = 469/609 (77%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 15793 ATCAAGCAGGTTCCCGGCATGGACGGCGTGTTCTATGCGCCCGCGGTGGGTGTGGATTTC 15852 || ||||| | |||||||||||||| ||||| || ||||| | |||||| | ||| Sbjct 1330 ATGAAGCAAGACCCCGGCATGGACGGGGTGTTTTACGCGCCGCTACTCGGTGTGAACTTC 1389 Query 15853 GAGCAGCCATACGCCTATTTCGTGGCCCCCGAGCCGGGTGAGGACACCGGTATTGATGCG 15912 ||||| || ||||||||| | || || || || | ||||||||| | || || Sbjct 1390 GAGCAACCCTACGCCTATCTTGTTGCGCCAGAATCCGGTGAGGACTCATCCATCACCTCG 1449 Query 15913 TGTTCGATCACTGACCACACACCTGAGGGTTGGCAGCACATCATCGGTGGGCGCAGCCCA 15972 || |||||| |||| || || |||||||||||||||||||||||||| || ||||| Sbjct 1450 TGCCGGATCACCAACCATACCCCCGAGGGTTGGCAGCACATCATCGGTGGCCGTAGCCCT 1509 Query 15973 AAGTGGTTGAATGACCTGATGAACGCCACCTTCGCGTGGCTGATCGACTCACTGATGATC 16032 ||||||||||| ||| ||||||| ||||| ||||||||| ||||||| || ||||||||| Sbjct 1510 AAGTGGTTGAACGACTTGATGAATGCCACGTTCGCGTGGTTGATCGATTCGCTGATGATC 1569 Query 16033 GTTGTTGGATTCACTGGCATACCCAGTGATCTTCTGTCGGGTTTCCTGAACAACAGCTTC 16092 || || || ||| | || || || || || || || || |||||||||||||||||| Sbjct 1570 GTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGCTTCCTGAACAACAGCTTC 1629 Query 16093 CTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAAGTTGGCCCGTACCATCCG 16152 ||||| |||||| | | ||||| |||||||| || |||||||| ||||| ||||| || Sbjct 1630 CTGGCCTTCCAGCTCCTGCAGCACTACGACCGACGCGACGAAGTCGGCCCCTACCACCCA 1689 Query 16153 GCGATCGAGCGGTTCTATCCGACAGCATCAGCGCCGTACAACATCGAAACGGTGTTCGCA 16212 ||| ||||||| |||||||| || |||||||| || |||||||||||||| || ||||| Sbjct 1690 GCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAACATCGAAACAGTATTCGCG 1749 Query 16213 TTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCGACGGTGCAGTTCCGCAAC 16272 |||||||||||| | |||||||| |||||| | || || || || ||||||||| Sbjct 1750 TTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCACAAGTCACGTTCCGCAAT 1809 Query 16273 GGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGCCTGATGTCGCTGGTGT-T 16331 |||| ||| || || ||||| | |||||||| ||||| |||||||| | || | Sbjct 1810 GGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGATTGATGTCGGTCGTCTAC 1869 Query 16332 CATGTCACGTACCCGAATGGTGACTGACTACATCGAAAACGTCATGTGGCGGGTTTCCCA 16391 || | | || ||| ||||| || ||||||||||| |||||||||||||| | | | Sbjct 1870 CACGGC-CGAACCAAGATGGTCACCGACTACATCGAGAACGTCATGTGGCGCATCACTCC 1928 Query 16392 GGATGAGCG 16400 |||||||| Sbjct 1929 AGATGAGCG 1937 Score = 174 bits (192), Expect = 6e-39 Identities = 205/275 (75%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 15349 CAGTCCGGGTGGCTGGAGTTCATCAACAACGGCCTGTCGTTAAACCCGGATATCCGGGCA 15408 ||||| |||||| |||| ||| |||||||| || ||||| ||||| || ||||| ||| Sbjct 894 CAGTCGGGGTGGATGGAAGCCATTAACAACGGGCTCTCGTTGAACCCCGACATCCGTGCA 953 Query 15409 TGGTTCGGCACCGTTCTGCAAGCCCTGTCGCGGGACGGGCTGTCGGTCCAGGCGTTCACC 15468 |||||||||||| | |||||||||||| || || || |||||| | || | ||| | Sbjct 954 TGGTTCGGCACCATCCTGCAAGCCCTGGACCGCGATGGCCTGTCGATTAAGACCTTCGCG 1013 Query 15469 CGCATGCTGCGAACCCCGGTGTATGTGTCACGCACCAATCCACTGCTGGACACGTCGCCG 15528 |||||||| || || || |||||| || ||||| || | |||||||| || ||| Sbjct 1014 CGCATGCTACGCACGCCAACGTATGTCAAGCGAACCAACCCGTTCCTGGACACATCCCCG 1073 Query 15529 ATG-GTGGCTCGCACAGTGCGGATGGAAACCGTTCAGGCCGTCATCAAGGACGTTACCCA 15587 || ||| | | || || || ||||| |||||| | || |||||||| || || | Sbjct 1074 TTGTGTGCCAAG-ACCGTCCGCATGGAGACCGTTGGCTCGGTAATCAAGGATGTCACGCG 1132 Query 15588 GTCGTACGGTGTGGATACCCGCATGGATTTGTGGC 15622 | |||||||| |||||||| |||||| |||||| Sbjct 1133 AGCCTACGGTGTAGATACCCGTATGGATCTGTGGC 1167 Score = 136 bits (150), Expect = 1e-27 Identities = 233/338 (69%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 14947 TGCGACAAGTTTTGGCAGCCGATGGGCGCTGTTGGTGGCGACCTGATCGAGGCGTCGGGT 15006 |||| |||||| ||| || ||||| | || ||| || || ||||||||||| Sbjct 479 TGCGGCAAGTTCTGGACACCCATGGGGTTAATCGGCAACGAACTCATGGAGGCGTCGGGG 538 Query 15007 GCTGACCCGCGCAACGATGTTGAAACCGGCCGGATCGTCCTCAAAGGGAACAGCCCTCTC 15066 | || || || || || |||| ||||||| | ||| || | ||||||||| Sbjct 539 ACCGATCCCCGTAATGACTGCCCTACCGCCCGGATCAAGCACAAGGGTGATAGCCCTCTC 598 Query 15067 ATCCCTTTGTTCATGGACTGCAAAAAGACGATGGTCGGTGTCATCGTCGAGACAGCCGGT 15126 | | |||||||||||||| || |||||||| || | || ||||| || || Sbjct 599 GTGCAGATGTTCATGGACTGCCGGAACACGATGGTGGGCATTGAGGTAGAGACCGCGGGG 658 Query 15127 TTGCGGTATGCGTTCTACACGAAGAACCACACCTACGAGTACCGCGACAGCGCATGGACC 15186 ||||| | |||||| || || ||| || ||||||| ||| |||| ||||| Sbjct 659 CTGCGGCAGAACTTCTACGTCAAAAAGCACGACTGGGAGTACCAAGACGGCGCTTGGACG 718 Query 15187 GGCACCGCTGAACTGCGCGGTATCCGCGACATCCTCAATTACTACGTGATTTGGCCGTCG 15246 || || | ||| || |||||| | ||||| ||||| || |||||||| |||||||| Sbjct 719 GGAACTGTTGAGGCCCGGGGTATCTGGGACATACTCAACTATTACGTGATATGGCCGTCA 778 Query 15247 TGGTGGCTGCCGATTCAGGCACAGCCGTTCTCGCACGC 15284 |||||||| || ||||| | |||||| || ||||| Sbjct 779 TGGTGGCTACCCCCACAGGCCCCGCCGTTTTCTCACGC 816 >seq38559 Length=768 Score = 284 bits (314), Expect = 4e-72 Identities = 286/369 (78%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 16015 ATCGACTCACTGATGATCGTTGTTGGATTCACTGGCATACCCAGTGATCTTCTGTCGGGT 16074 ||||| | ||||||||||| || || ||| | || || || || || || || || Sbjct 389 ATCGATGCGCTGATGATCGTGGTCGGGTTCTCCGGTATCCCATCAGACCTGCTATCCGGC 448 Query 16075 TTCCTGAACAACAGCTTCCTGGCGTTCCAGTTGATTCAGCATTACGACCGCCGTGACGAA 16134 ||||||||||||||||||||||| |||||| | || ||||| |||||||| || |||||| Sbjct 449 TTCCTGAACAACAGCTTCCTGGCCTTCCAGCTCATGCAGCACTACGACCGACGCGACGAA 508 Query 16135 GTTGGCCCGTACCATCCGGCGATCGAGCGGTTCTATCCGACAGCATCAGCGCCGTACAAC 16194 || ||||| ||||| || ||| ||||||| |||||||| || |||||||| || |||||| Sbjct 509 GTCGGCCCCTACCACCCAGCGGTCGAGCGCTTCTATCCCACCGCATCAGCCCCCTACAAC 568 Query 16195 ATCGAAACGGTGTTCGCATTCATCAACGCCTTGTTTGATTCGCAGGGCAAGACGACGGCG 16254 |||||||| || ||||| |||||||||||| | |||||||| |||||| | || || || Sbjct 569 ATCGAAACAGTATTCGCGTTCATCAACGCCCTCTTTGATTCACAGGGCTACACCACCGCA 628 Query 16255 ACGGTGCAGTTCCGCAACGGTGCCCAGTATGCGTTGGGTCGGGACGTTTTTCGCGGCGGC 16314 || ||||||||| |||| ||| || || ||||| | |||||||| ||||| Sbjct 629 CAAGTCACGTTCCGCAATGGTGACCAATACGCCTTGGGAAGAGACGTTTTCAAGGGCGGA 688 Query 16315 CTGATGTCGCTGGTGT-TCATGTCACGTACCCGAATGGTGACTGACTACATCGAAAACGT 16373 |||||||| | || | || | | || ||| ||||| || |||||| |||| ||||| Sbjct 689 TTGATGTCGGTCGTCTACCACGGC-CGAACCAAGATGGTCACCGACTACCTCGAGAACGT 747 Query 16374 CATGTGGCG 16382 ||||||||| Sbjct 748 CATGTGGCG 756 Score = 150 bits (166), Expect = 6e-32 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15625 CCAGGTGATCCGCAGCCTGACAGGTGGGCGAACCTGGACCAGCCTACCTACGTGTTTTCC 15684 || |||||| |||||| || |||| | ||| || || || || || || ||||| Sbjct 1 CCCGGTGATGAGCAGCCCGATCAGTGGATCACCCTCGATCAACCCACATATGTCTTTTCG 60 Query 15685 ACAGTGGACCGGTCGCAGATCACTGGTCCGACGAAAACCGTGCTCGATTCGGTGCTGCGC 15744 || || ||||| || ||| || || || ||||| || || |||||||| |||| Sbjct 61 ACTGTCGACCGCAGCCAAATCGAAGGCCCCACAAAAACTGTCCTTGATTCGGTCTTGCGG 120 Query 15745 ACCACGATTGACCTTGGCGGGTCGCTGGGGGACATCTTCAAACCTGTCATCAAGCAGGTT 15804 || | ||||| || || ||||| || | |||||||| || ||||| ||||| || Sbjct 121 ACGGTAGTGGACCTGGGTGGATCGCTCGGCGGGATCTTCAAGCCGGTCATGAAGCAAGTC 180 Query 15805 CCCGGCATGGACGGCGTGTTCTATGCGCCCGCGGTGGGTGTGGATTTCGAGCAGCCATAC 15864 |||||||||||||| |||||||| ||||| | |||||| | |||||||| || ||| Sbjct 181 CCCGGCATGGACGGGGTGTTCTACGCGCCGCTACTCGGTGTGAACTTCGAGCAACCCTAC 240 Query 15865 GCCTATTTCGTGGCCCCCGAGCCGGGTGAGGAC 15897 |||||| | || || || || | ||||||||| Sbjct 241 GCCTATCTTGTTGCGCCAGAATCCGGTGAGGAC 273 >seq43497 Length=1050 Score = 84.2 bits (92), Expect = 8e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 17427 CCGGAGTGGGCGCATGCGGTGCCGTCTGAGCCGGGTATTCACCCGGAACAGTCGGCGTTG 17486 || || |||||||| ||| | ||||||| || | | || | ||| ||| | | || Sbjct 42 CCCGAATGGGCGCAGGCGATCCCGTCTGCCCCAG---TCCATCAGGAGCAGCC--CAATG 96 Query 17487 CAGTGGCAGCGTCCGTTCACTGTTCAGCAGCTGCTTGAGATTGGTGAGCAGTTCATCGAG 17546 || || || |||||||| | |||||||| ||||| | ||||| ||| |||||||| Sbjct 97 AGCTGACA-CGGCCGTTCACGGCGCAGCAGCTCATTGAGTTCGGTGAACAGCTCATCGAG 155 Query 17547 CAGTTTTTGGCGTGGGTGGTGCGCGCGGTCGCTGGGGTGTTCATCCCTGGTGAGGCGTCG 17606 ||||| || | | || || | || || | || |||||||| ||||| | ||| Sbjct 156 CAGTTCCTGCGGCGCGTAGTCCTGGCCGTGGTCGGCTCATTCATCCCCGGTGAAGGCTCG 215 Query 17607 TTCGACCAGTTGCGTGATTGGGCTTTGAACATCCCCAT 17644 ||||| ||| || || ||||| | | ||||||||| Sbjct 216 TTCGAGCAGCTGGAGGAATGGGCATACAGCATCCCCAT 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177745615898500