Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028912.1 Length=49717 Score E Sequences producing significant alignments: (Bits) Value seq46163 98.7 3e-16 >seq46163 Length=1271 Score = 98.7 bits (108), Expect = 3e-16 Identities = 303/459 (66%), Gaps = 40/459 (9%) Strand=Plus/Plus Query 4397 ATCGAAAGGCAG---AC---ATGAGCTTCCGCACTGCTTATGGCAATGCGTACTCCGAGA 4450 ||||||||| || || ||||| |||||||| || || |||||| || ||||||| Sbjct 707 ATCGAAAGGAAGTACACCCGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGA 766 Query 4451 ACGGTTGGCGTATGTGCAACCGCGACGAGTGCGTGA-CG-----GTCTCCGGACCGTA-- 4502 |||||||||||||||||||||| ||||| |||| | || || || | ||| Sbjct 767 ACGGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACC 826 Query 4503 -CATGAACACCGCACCGCTACGGCGTGGTCCTGCCG-AGAAGCTCCTCGGAG---AGTTC 4557 | | | ||||||||||| | || || | ||| || ||||||| | | | Sbjct 827 TCGTCGATACCGCACCGCTGC-GCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTG 885 Query 4558 GTCAGGCGCTACCACCAGGTGTGCGCCCCGGTCGTGTCCCCGGTGTGGGGCTGGTCTCAG 4617 | || ||| | | || || | || ||||| |||||||| |||||| Sbjct 886 TACTGGTATGACCGCAACGT---CGAAGAGATCACCTCCCCCGTGTGGGGGTGGTCTGCC 942 Query 4618 ACCAACGATG-TGGGCAACTCGAATCACCTGTCGGGCACCGCAGTTGACGTCAACGCACC 4676 || ||||||| | | |||| ||||||||| | |||||||| |||||||| | ||||| Sbjct 943 ACTAACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACC 1002 Query 4677 GCAGTGGCCTTGG----GGCCTTCGCAAGATGCC----CGCTGACCTGGTTGCGCGGATC 4728 ||| || ||| || || |||||| ||| | || | | ||| Sbjct 1003 CAAGTACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAGGCCAAGGTCCGC----- 1057 Query 4729 AACGTGCTGCTGGACCAGTTCGAGGGTGCGATCTACTGGGGTCGCAACTGGAACCGTCCG 4788 | | || |||| | ||||||||| || | | |||||| ||| ||||| || || Sbjct 1058 -AAGGGC--CTGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCC 1114 Query 4789 GACGAGATGCACTTCCAGCTCAACTGGCGGGAGGGTGAC 4827 ||||||||||||| |||| | ||||| ||||| ||| Sbjct 1115 GACGAGATGCACTACCAGATGGCCTGGCCCGAGGGCGAC 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158876994048500