Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_028947.1 Length=62738 Score E Sequences producing significant alignments: (Bits) Value seq46163 104 9e-18 >seq46163 Length=1271 Score = 104 bits (114), Expect = 9e-18 Identities = 196/294 (67%), Gaps = 36/294 (12%) Strand=Plus/Plus Query 24805 ATGTCGGAATATCAAGCCGCGCACCGGCGTGCGTGCAGCGCAGCGATCACAGCGCTCGGC 24864 ||||| ||||| ||||| ||||||| || || ||| |||| || ||||| || |||||| Sbjct 227 ATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCTGCGCCGCAATCACCGCACTCGGC 286 Query 24865 AACCGTATCGGCCTGTTCACGGGAGCTACCCGCGTCGGCACCGTATCGGGTGACACCACC 24924 ||||| ||||| || ||| | || | ||||| || ||||||| | | ||||||||| Sbjct 287 AACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAGGCACCGCCTACGCCGACACCACC 346 Query 24925 TGGGGGACGCCGGCGGACATCAACGAGGCGGTCGACCCTCGGCTTCCTGTCAGTGGCAGC 24984 |||| || | | ||||| ||||| | Sbjct 347 TGGGCCACCC------------------CAGTCGA------------TGTCACCG----- 371 Query 24985 AACCCGGCTGTCGACAAGGCGCAGGTGACCGGGTCGACGGTCACGATCACCGTGCCTGGC 25044 || ||||| |||||||||| ||||| ||| ||| || ||| | || |||||| Sbjct 372 AATCCGGC-ATCGACAAGGCATCATCCACCGGCTCGCTGGTAACCATCTCGGTACCTGGC 430 Query 25045 GGCACCGTCGCGAACGGCGCAGTCATCGACCGGTACGGGGTGTTCAACGGCACG 25098 |||||||| || |||||| | || ||| |||||||||| ||| | ||| || || Sbjct 431 GGCACCGTGGCCAACGGCACGGTGATCAACCGGTACGGCGTGGTGAACCGCGCG 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200512703004250