Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq598 269 2e-67 seq388 165 7e-36 >seq598 Length=3788045 Score = 269 bits (298), Expect = 2e-67 Identities = 507/743 (68%), Gaps = 33/743 (4%) Strand=Plus/Plus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATC--CGGAGC 6544 ||||| ||| ||||||| || || |||| || |||| || ||||| || ||| | Sbjct 455272 TCGAAGAATGTTGAGCTTCGGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCGGTG- 455330 Query 6545 CGCTC-GATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGG 6603 |||| | || |||||||| |||| | || ||||| ||||| || | || || || Sbjct 455331 -GCTCAGCCATGATTCAGGTAACTATGTGGGTCTCCCAAAGTATGTACAAAGTCACCTGG 455389 Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 | | || || || ||||| ||||||||| | || || || ||||||||||| Sbjct 455390 CCTAAGGTCTGTGATGTGTGCAATCATATACGTGAGCGGGGCATAGCTGGCAATGTTGAA 455449 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATC----------GTT-GATAGAGCTGGCAGGAC 6712 ||| || | ||| ||||||||| | || ||||||||||||||||| Sbjct 455450 AGGCGTGCCCAGGACCACGTCTCCCGACCTCCGACCTCCGTCCGATAGAGCTGGCAGGAC 455509 Query 6713 AGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGA 6772 ||||| || | | | ||| |||| |||||||| | ||||| || || ||||||||||| Sbjct 455510 AGCTCGCCGTCCACCACGCAGAACTGGCAGAGCGCGTGGCCTGGAGGCTGCGCCATCAGA 455569 Query 6773 GGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC 6832 |||||| | || || ||||| || || | | || |||||||| ||||| || || Sbjct 455570 GGGAGAGCTTTTGGATTCCAAGCACAGGTGATGAGTCTTCTGTCGTCAGGATTGGCTTTG 455629 Query 6833 AAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTC 6892 | ||||| ||||| | ||||| ||||| || || || |||||||| | | | Sbjct 455630 ATAGTGTCAATCACTTTTTGCAGTTGGTCTACTTTTTGCCCAGAATAGTCTGAATTCATA 455689 Query 6893 CCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCC 6952 || || |||||||| |||||||||||||| || || || || |||||||| || Sbjct 455690 TTTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCACCT 455749 Query 6953 TCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGA----------CCCGTG 7002 || || | | | ||| ||| | |||||| |||||| |||| |||| | Sbjct 455750 TCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCCTGAGATCATTGTAGCCCCGAG 455809 Query 7003 A------GCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCC 7056 | | |||||||| ||||| ||| || || || | || | ||| |||| || Sbjct 455810 ATCATTGTCATCCCAGATTTTCACTCCCTTAGAAGATAGTTTATTAGCGTTTGTGGATCC 455869 Query 7057 CCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAG 7116 | | | ||||| |||| ||| || | || ||||||||| | ||||| || || ||||| Sbjct 455870 CTTGATAAACCAAAGCAACTCTTCCAAAACCCCCTTCCAGAATACACG-TTGGTTGTCAG 455928 Query 7117 CAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCC 7176 ||| |||||||| | || ||| |||| || ||| | ||| |||||| || ||||| | Sbjct 455929 CAGAGGAAATTCATCTCGCAGGCTGTAGCGCGCCCGCATGCAGAACACCGACAGGGTATC 455988 Query 7177 CGTCCCGGTCCGGTCCCCCTTCC 7199 ||| | | |||||| ||| || Sbjct 455989 CGTGCACTTGCGGTCCTCCTCCC 456011 Score = 269 bits (298), Expect = 2e-67 Identities = 507/743 (68%), Gaps = 33/743 (4%) Strand=Plus/Minus Query 34146 GGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACA 34205 || ||| |||||| | | |||| ||||| || |||||| ||| | ||| || |||| Sbjct 456011 GGGAGGAGGACCGCAAGTGCACGGATACCCTGTCGGTGTTCTGCATGCGGGCGCGCTACA 455952 Query 34206 ACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCG 34265 ||| || | |||||||| |||||||| || || ||||| | ||||||||| || | | Sbjct 455951 GCCTGCGAGATGAATTTCCTCTGCTGACAACCAA-CGTGTATTCTGGAAGGGGGTTTTGG 455893 Query 34266 AGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG 34325 | ||| |||| ||||| | | ||| |||| ||| | || | || || || ||| | Sbjct 455892 AAGAGTTGCTTTGGTTTATCAAGGGATCCACAAACGCTAATAAACTATCTTCTAAGGGAG 455833 Query 34326 TGAAGATCTGGGACGC------TCACGGG----------TCTCGAGACTTTCTGGACAAG 34369 |||| |||||||| | || |||| |||| |||||| |||||| Sbjct 455832 TGAAAATCTGGGATGACAATGATCTCGGGGCTACAATGATCTCAGGACTTTTTGGACAGC 455773 Query 34370 CGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGA 34429 | ||| ||| | | | || || || |||||||| || || || || |||||||||||| Sbjct 455772 CTGGGATTCTCCACCAGAGAAGAAGGTGACTTGGGTCCTGTTTATGGCTTCCAGTGGAGA 455713 Query 34430 CACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAG 34489 || |||||||| || || | | | |||||||| || || || ||||| Sbjct 455712 CATTTTGGGGCAGAATACAAAAATATGAATTCAGACTATTCTGGGCAAAAAGTAGACCAA 455653 Query 34490 CTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGC 34549 ||||| | ||||| ||||| | || || ||||| |||||||| || | | || Sbjct 455652 CTGCAAAAAGTGATTGACACTATCAAAGCCAATCCTGACGACAGAAGACTCATCACCTGT 455593 Query 34550 GCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAA 34609 || ||||| || || | ||||||||||||||||| || || ||||| | |||||||| Sbjct 455592 GCTTGGAATCCAAAAGCTCTCCCTCTGATGGCGCAGCCTCCAGGCCACGCGCTCTGCCAG 455533 Query 34610 TTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATC-AAC----------GATCGG 34658 |||| ||| | | | || |||||||||||||||||||||| || | |||| Sbjct 455532 TTCTGCGTGGTGGACGGCGAGCTGTCCTGCCAGCTCTATCGGACGGAGGTCGGAGGTCGG 455473 Query 34659 GAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGA 34718 ||||| ||| | || ||| ||||||||||| || || || | ||||||||| |||| Sbjct 455472 GAGACGTGGTCCTGGGCACGCCTTTCAACATTGCCAGCTATGCCCCGCTCACGTATATGA 455413 Query 34719 TCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATA 34778 | || || || | | || || || | || ||||| ||||| || | |||| Sbjct 455412 TTGCACACATCACAGACCTTAGGCCAGGTGACTTTGTACATACTTTGGGAGACCCACATA 455353 Query 34779 TCTACCTGAACCACATC-GAGCGGCTCCG--GATCCAGCTGCAACGAGAGCCCCGACCGT 34835 |||||||| || | |||| | ||| || ||||| || |||| || |||| | Sbjct 455352 GTTACCTGAATCATGGCTGAGC--CACCGAAAATTCAGCTTCAGAGAGAACCAAGACCTT 455295 Query 34836 TCCCCCAGCTCAAAATTATTCGA 34858 | || ||||||| ||| ||||| Sbjct 455294 TTCCGAAGCTCAACATTCTTCGA 455272 >seq388 Length=3990105 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||||||||||||||| || || ||||| | |||||||| |||||||| | | || Sbjct 2997300 GATCTCCCTCTGATGGCGCTGCCTCCATGCCATGCGCTCTGCCAGTTCTACGTGGTGGAT 2997359 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||||||||||||||| || | || ||||||||||| | || ||||| ||| Sbjct 2997360 GGTGAGCTGTCCTGCCAGCTCTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTTC 2997419 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || ||||||||||| ||||| || || Sbjct 2997420 AACATTGCCAGCTATGCCCTGCTCACGTATATGATTGCACA 2997460 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||| ||||||||||| || || || ||||||||||| ||||| || | ||| Sbjct 2997460 TGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 2997401 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || |||||||||||||||||||| |||| | | |||||||| ||| Sbjct 2997400 ATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACCACGTAGAACTGG 2997341 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | ||||| || || |||||||||||||||||||| Sbjct 2997340 CAGAGCGCATGGCATGGAGGCAGCGCCATCAGAGGGAGATC 2997300 Score = 116 bits (128), Expect = 3e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| ||||||| || || || ||| ||||| |||||||| || | || |||| Sbjct 2992844 CCACAAACGCCAAGGAACTATCTTCTAAGGGAGTGAAAATCTGGGATGCCAATGGATCTC 2992903 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||| ||| | | | || || ||||||||||| || || | Sbjct 2992904 GAGACTTTTTGGACAGCCAGGGATTCTCCACCAGAGAAGAAGGCGACTTGGGTCCTGTTT 2992963 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| |||||||| || || Sbjct 2992964 ATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 2992997 Score = 116 bits (128), Expect = 3e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| |||||||||||||| || || || || ||||||||||| || || Sbjct 2992997 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTTCT 2992938 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||| |||||||||||| || | || |||||||| ||| Sbjct 2992937 CTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTC 2992878 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| || || || ||||||| ||| |||| Sbjct 2992877 ACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGG 2992844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447978033540000