Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq43265 109 5e-19 seq309 107 2e-18 seq50 98.7 9e-16 seq139 93.3 4e-14 seq460 89.7 4e-13 >seq43265 Length=2440742 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| ||| || ||| |||||| || || ||||| || | Sbjct 2202529 GCCGCCTCGCACACGCAGCACCAGATGGAGGGTGGACTCTTTCTGGATGTTATAGTCAGA 2202588 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| || || | || || ||||||||||| |||||||| ||||||||||||| || || Sbjct 2202589 AAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTTGGGTGG 2202648 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| ||||| |||||| |||| || | | || || || | | || Sbjct 2202649 GATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCCTGAC 2202708 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | | ||||| | || |||||||| || || || ||||| ||||||||| || Sbjct 2202709 CTTGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTTGCG 2202763 >seq309 Length=2273895 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| |||||| || || || || || | || || || | || || Sbjct 961370 CACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTC 961311 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||||||||||| |||||||||||||||| || | || || ||||| Sbjct 961310 CAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCGGATGGGATGCCCTACTTGTCTTG 961251 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| | | || | | ||||| || | ||| | || | ||||| | || Sbjct 961250 GATTTTGGCCGTCACATTCTCTATGGTATCCCTGGGCTCAGCCTCGAGGGTGATGGTCTT 961191 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 |||||||| || || || ||||| ||||||||| Sbjct 961190 GCCCGTCAGGGTCTTCACGAAGATCTGCATCTTT 961157 >seq50 Length=2506936 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| |||||| || || || || || | || || || | || || Sbjct 1731565 CACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCATCCTC 1731506 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||||||||||| |||||||||||||| | ||| | || || ||||| Sbjct 1731505 CAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTTCTTGTCTTG 1731446 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| |||| || | | ||||| || | ||| || || | | ||| | || Sbjct 1731445 GATTTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCGACCTCGAGGGAGATTTTCTT 1731386 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 |||||||| || || | ||||| || ||||| Sbjct 1731385 GCCCGTCAGGGTCTTCATGAAGATCTGTGTCTTT 1731352 >seq139 Length=10686148 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| || || ||| |||||| || || || | || | Sbjct 400201 GCCGCCTCACAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGCAGTCAGA 400142 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC------TGGTC 39170 || | || | || || ||||||||||| |||||||| ||||||||| |||| Sbjct 400141 CAGCATGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTGGTGGTG 400082 Query 39171 GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA 39230 || ||| | || ||| ||||| |||||| |||| || ||| || || || | Sbjct 400081 GGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTCTCCATGGTGTCACTGGC 400022 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||| || || | ||||| | || |||||||| || || || ||||| ||||||||| Sbjct 400021 CTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTT 399964 >seq460 Length=2238155 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| |||| | || || || || || | | || || | || || Sbjct 439778 CACCAGATGCAGGGTGGACTCTCTCTGGATGTTGTAGTCAGAGACAGTGCGGCCATCTTC 439719 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||||||||||| || ||||||||||||| | | || ||| ||||| Sbjct 439718 CAGCTGTTTGCCCGCAAATATCAGGCGCTGCTGGTCGGGTGAGATGCCCTCCTTGTCTTG 439659 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 | |||| |||| || | | || || || | ||| || || | ||||| | || Sbjct 439658 GGTTTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 439599 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 || ||||| || || | ||||| ||||||||| || Sbjct 439598 GCCTGTCAGGGTCTTCATGAAGATCTGCATCTTTGCG 439562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429279919334750