Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq388 154 1e-32 seq598 134 1e-26 seq46569 102 7e-17 seq579 91.5 1e-13 seq398 91.5 1e-13 seq44019 82.4 6e-11 >seq388 Length=3990105 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || ||||| |||||||| || | |||||||| ||||| |||||| Sbjct 2997472 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2997413 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| ||||||||||||||||||||||| || ||||| || || | Sbjct 2997412 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2997353 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||| ||||| || ||||| ||| Sbjct 2997352 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAGA 2997308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| ||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 2992985 AAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTTCTCTGGTGGAGAAT 2992926 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| || || ||||| |||||||| || || ||||| Sbjct 2992925 CCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTCACTCCCTTAGAA 2992866 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || || |||| ||||||||| || Sbjct 2992865 GATAGTTCCTTGGCGTTTGTGGATCC 2992840 >seq598 Length=3788045 Score = 134 bits (148), Expect = 1e-26 Identities = 414/648 (64%), Gaps = 29/648 (4%) Strand=Plus/Plus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACG-TGGTCAAGGTA 29670 ||||| ||||| || || |||| |||||||| || | || || | || | ||||| Sbjct 455291 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCGGTGGCTCAGCCATGATTCAGGTA 455350 Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730 || | ||||||| || || ||||| || || || || | |||| ||| || Sbjct 455351 ACTATGTGGGTCTCCCAAAGTATGTACAAAGTCACCTGGCCTAAGGTCTGTGATGTGTGC 455410 Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790 ||||| |||||||| | | |||||||| ||||| || ||| || || ||| ||| Sbjct 455411 AATCATATACGTGAGCGGGGCATAGCTGGCAATGTTGAAAGGCGTGCCCAGGACCACGTC 455470 Query 29791 CCCTGACCTCTGG-----------TAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || |||||| | ||||||||||| || ||||| ||||| |||| | Sbjct 455471 TCCCGACCTCCGACCTCCGTCCGATAGAGCTGGCAGGACAGCTCGCCGTCCACCACGCAG 455530 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAG 29899 ||||| || | || |||| ||||| | ||||| ||| | |||| || ||||| Sbjct 455531 AACTGGCAGAGCGCGTGGCCTGGAGGCTGCGCCATCAGAGGGAGAGCTTTTGGATTCCAA 455590 Query 29900 GCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 29959 ||||| ||||| | ||||| || || ||| |||| ||| | | |||||| Sbjct 455591 GCACAGGTGATGAGTCTTCTGTCGTCAGGATTGGCTTTGATAGTGTCAATCACTTTTTGC 455650 Query 29960 AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAA 30019 || || || || ||| || ||||||| | ||| Sbjct 455651 AGTTGGTCTACTTTTTGCCCAGAATAGTCTGAATTCATATTTTTGTATTCTGCCCCAAAA 455710 Query 30020 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30079 || ||||||||||| || || || || |||| ||| || ||||| ||| ||| ||| Sbjct 455711 TGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCACCTTCTTCTCTGGTGGAGAATCCC 455770 Query 30080 CTCTTGTCCAAAAAGTC------TC--TGGA--------ACCGTTGGCGTCCCAGATCTT 30123 ||||||||||||| || || | | | ||| | |||||||| || Sbjct 455771 AGGCTGTCCAAAAAGTCCTGAGATCATTGTAGCCCCGAGATCATTGTCATCCCAGATTTT 455830 Query 30124 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30183 || ||||| || || | || | ||||||||| || ||| ||||| |||| ||| Sbjct 455831 CACTCCCTTAGAAGATAGTTTATTAGCGTTTGTGGATCCCTTGATAAACCAAAGCAACTC 455890 Query 30184 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 |||| || ||||||| || || | ||||| || || || ||||| Sbjct 455891 TTCCAAAACCCCCTTCCAGAATACAC-GTTGGTTGTCAGCAGAGGAAA 455937 >seq46569 Length=4817335 Score = 102 bits (112), Expect = 7e-17 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | || || | Sbjct 4565593 ATGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCCTT 4565534 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| || Sbjct 4565533 TAAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGGTATT 4565474 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGC 114440 || |||||| | ||||| |||| |||| || |||| | ||||| || || | Sbjct 4565473 TTGTTTACCTTCTACTGAAGAGGTAGTGGTCGTTCTCTGGAAA-TACTTAAATTCATTCC 4565415 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGG 114495 ||| ||| |||| ||||| || ||||| || ||||||||||| ||||| Sbjct 4565414 TGAGT------GGAGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATTTCTGG 4565366 >seq579 Length=4107578 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/240 (70%), Gaps = 11/240 (5%) Strand=Plus/Minus Query 114263 TGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTC 114322 |||||||| || || || || || || || ||||| || | || | |||||| | Sbjct 165511 TGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAGAACAAA-TTAATTCTGTCTTTT 165453 Query 114323 AGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTC 114382 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| | || Sbjct 165452 AAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGATATTT 165393 Query 114383 TGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCA 114441 || |||||| | ||||| || | ||||| || |||| | |||| || || | Sbjct 165392 TGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAA-TAATTAAGTTCATTCCT 165334 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499 || |||| |||| |||| || | ||| || |||||||||||| ||| |||||| Sbjct 165333 GAG------CGGAGGCCAGGGCAAGTCCCGGTTCTTGCCGATGCCCATGTTCTGGGACAC 165280 >seq398 Length=3125954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/240 (70%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 114263 TGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTC 114322 |||||||| || || || || || || || |||| || | || | |||||| | Sbjct 2057361 TGAGCTCCTCGTGGAGGTTCCTTGAGTTCTCTACTGAAAACAAAATTAATTCTGTCTTTT 2057302 Query 114323 AGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTC 114382 | ||| | ||||||||| || ||||| ||||| ||||| |||||||| ||||| | || Sbjct 2057301 AAAGGCCGATTCTTTTCAGGAATGGAAAACCAGGTCTTCCTACCCATAATCACGATATTT 2057242 Query 114383 TGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTGCA 114441 || |||||| | ||||| || ||||| || |||| | ||||| || || | Sbjct 2057241 TGTTTACCTTCTACTGAAGAAGTTATGGTCATTCTCTGGAAA-TACTTAAATTCATTCCT 2057183 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499 || | || |||| |||| || ||||| || |||||||||||| ||| |||||| Sbjct 2057182 GAG------CAGAGGCCAGGGCAAGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGACAC 2057129 >seq44019 Length=1131195 Score = 82.4 bits (90), Expect = 6e-11 Identities = 164/237 (69%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| | || || || || || || || || || |||| || | || || | Sbjct 313221 ATGAGCTCCTGGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTAAATTAATTCTATCCTT 313162 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||| ||||||||| || ||||| ||||| ||||| |||||||| |||| | || Sbjct 313161 TAAAGGCTGATTCTTTTCAGGAATGGACAACCAGGTCTTCCTACCCATAATCATGATATT 313102 Query 114382 CTGCTTACCT-CTGTCGGAAGACGTAGCGGTCAAGG-CTCGAAAGTGTTTAAAATCTTTG 114439 ||| |||||| ||| | ||||| || | ||||| || |||| | ||||| || || Sbjct 313101 CTGTTTACCTTCTG-CTGAAGAGGTTGTGGTCATTCTCTGGAAA-TACTTAAATTCATTC 313044 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 114495 | || | || |||| || || || ||| || | |||||||||| ||||| Sbjct 313043 CTGAGCC------GAGGCCAGGGTAGGTCCTTGTTCTTGCTGATGCCCATGTTCTGG 312993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405911981714500