Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq598 172 4e-38 seq388 134 1e-26 >seq598 Length=3788045 Score = 172 bits (190), Expect = 4e-38 Identities = 430/648 (66%), Gaps = 29/648 (4%) Strand=Plus/Plus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACG-TGATCCAGGTA 27164 ||||| ||||| || || |||| |||||| | ||| | || || | |||| |||||| Sbjct 455291 GGAAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCGGTGGCTCAGCCATGATTCAGGTA 455350 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 || | |||||||| || || ||||| || || || || | |||| ||| || Sbjct 455351 ACTATGTGGGTCTCCCAAAGTATGTACAAAGTCACCTGGCCTAAGGTCTGTGATGTGTGC 455410 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT-AAAGG-GTACCCCGAGCCCCATG 27282 ||||| |||||||| | | |||||||| ||||| ||||| || ||| | || | | Sbjct 455411 AATCATATACGTGAGCGGGGCATAGCTGGCAATGTTGAAAGGCGTGCCCAGGACCACGTC 455470 Query 27283 TCCC-----CCGACCTCTGG----TAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 |||| |||||||| | |||||||| || || ||||| || || ||| | Sbjct 455471 TCCCGACCTCCGACCTCCGTCCGATAGAGCTGGCAGGACAGCTCGCCGTCCACCACGCAG 455530 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 27393 ||||| || | ||||||| ||||| | ||||| || | |||| || ||||| Sbjct 455531 AACTGGCAGAGCGCGTGGCCTGGAGGCTGCGCCATCAGAGGGAGAGCTTTTGGATTCCAA 455590 Query 27394 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 27453 || || ||||| | ||||| || || ||| |||| ||| | | |||||| Sbjct 455591 GCACAGGTGATGAGTCTTCTGTCGTCAGGATTGGCTTTGATAGTGTCAATCACTTTTTGC 455650 Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAA 27513 || || || || ||| || |||||| |||| | |||| ||||| || ||| Sbjct 455651 AGTTGGTCTACTTTTTGCCCAGAATAGTCTGAATTCATATTTTTGTATTCTGCCCCAAAA 455710 Query 27514 TGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 27573 || ||||| ||||| || || || || |||| ||| || ||||| ||| ||| ||| Sbjct 455711 TGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCACCTTCTTCTCTGGTGGAGAATCCC 455770 Query 27574 CTCTTGTCCAAAAAGTC------TC--TGGA--------ACCGTTGGCGTCCCAGATCTT 27617 ||||||||||||| || || | | | ||| | |||||||| || Sbjct 455771 AGGCTGTCCAAAAAGTCCTGAGATCATTGTAGCCCCGAGATCATTGTCATCCCAGATTTT 455830 Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 27677 || ||||| || || | || | ||||||||| || ||| ||||| |||| ||| Sbjct 455831 CACTCCCTTAGAAGATAGTTTATTAGCGTTTGTGGATCCCTTGATAAACCAAAGCAACTC 455890 Query 27678 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 |||| || ||||||| || || | ||||| || || || ||||| Sbjct 455891 TTCCAAAACCCCCTTCCAGAATACAC-GTTGGTTGTCAGCAGAGGAAA 455937 >seq388 Length=3990105 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || ||||| |||||||| || | |||||||| ||||| ||||| Sbjct 2997472 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2997413 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || ||||||||||||||||| || || ||||| ||||| Sbjct 2997412 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2997353 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 2997352 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCATCAG 2997309 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| ||||| || ||||| ||||| ||||| || || || || |||| ||| || |||| Sbjct 2992999 TGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACAGGACCCAAGTCGCCTTCTT 2992940 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | ||| ||| ||| ||||||||||||||| || || ||||| |||||||| | Sbjct 2992939 CTCTGGTGGAGAATCCCTGGCTGTCCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTT 2992880 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 | || ||||| || || || |||| ||||||||| || Sbjct 2992879 TCACTCCCTTAGAAGATAGTTCCTTGGCGTTTGTGGATCC 2992840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369278654023250