Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_030916.1 Length=56212 Score E Sequences producing significant alignments: (Bits) Value seq40065 168 2e-37 >seq40065 Length=1045 Score = 168 bits (186), Expect = 2e-37 Identities = 422/629 (67%), Gaps = 23/629 (4%) Strand=Plus/Plus Query 37491 GGTCACGCGCCGGCCGCTCATCGCGGGCGTGTCGACGGTGTGGGCCAACCGCGTCAAGGG 37550 || |||||||||||| || || ||| | ||||| || |||| ||||| | |||||| Sbjct 3 GGGCACGCGCCGGCCACTACTCCAAGGCCTCTCGACCGTCTGGGGGAACCGGGACAAGGG 62 Query 37551 CACCGTCACCGTGATCTACGACGAGCTCGGCGCCGACGCGACGACCGAGTTCAACCACCG 37610 | |||| |||||||||| |||| ||||| | ||||||||| | || | || || || Sbjct 63 CCAGGTCAGCGTGATCTACAACGAACTCGGGACGGACGCGACGGCGGACTACACCCGTCG 122 Query 37611 CCACGACCGGCTGAACCTGAAGTTCGTCACCGACCCCGACTGG---ACGCTCCTCATGGA 37667 | ||| ||| | || | || ||| || ||||||| ||| || || ||| | Sbjct 123 AAATGACGTGCTCGCCTTGCAATTTGTCGCCCACCCCGATTGGGCCACCCTGTTCAATGC 182 Query 37668 CGCGGTCCGGGCGGATCCGTGCGGGCAGGAGGAGTTCTCGGACCTCATCGAGTCCGTTGG 37727 ||| | | || | ||| | ||| ||| ||| ||||| |||||| | || Sbjct 183 CGCTGAC-GGCAAGTTCCACTCT--CAGCTGGATTTCGGCGACCTGATCGAGCAGGCCGG 239 Query 37728 GCACCTCATCCGGTCGCACAAGACCGCGGAGCTGATGGAGATCGTCGAGAGCATCCGGGC 37787 |||||| ||| |||||| || |||| || | ||||||||| |||| |||||||| || Sbjct 240 GCACCTGATCACCTCGCACCAGGCCGCCGATGTCATGGAGATCATCGACAGCATCCGAGC 299 Query 37788 ---GAGCTCGTCCGGGTCGTTCGAGTCGCGGATCAACCGGGCGAACGGGTCGCAGACCCT 37844 |||| | || || |||||||| | ||||| || || | | | || ||| Sbjct 300 ATCGAGCAAG---GGATCATTCGAGTCAGGAATCAAGCGCGCCACCAGCAGCGTGAACCT 356 Query 37845 CGCGTACAGCGAGGAGGTGTCCGCGACGGCGGGC--CGGACCTCG-CAGATCGAGGTGCC 37901 | ||||||||||| || || || | ||||||| || | |||| || | ||| | || Sbjct 357 GACCTACAGCGAGGAAGTATCGGCCAAGGCGGGCACCGCAACTCGGCAACTTGAGATACC 416 Query 37902 GCAGACGATCACGTTCAGCGCGCCGCCGTTCGAGGACTACCCGCCGGTCGAGGTCGTGTG 37961 || ||||| || || | || ||||||||||||||| ||||||| ||| Sbjct 417 GCGCGAAATCACCTTGTCGGCCCGACCATTCGAGGACTACCCGGTCATCGAGGTTCGGTG 476 Query 37962 CTGGCTCCGCCTGCGGATC-AGCGGCGGGCAGCTGCGGCT-GAC--GTTGCAGGCGCAGC 38017 |||| | |||||| ||| || | ||||| ||| |||| | | ||| | | |||| Sbjct 477 CTGGTTGCGCCTGAACATCTCGCAG-GGGCAACTGGGGCTCGGCCTGTTCC---CACAGC 532 Query 38018 CGTTCCAGCACGTCATCCGGGAGACGTGGACGTCGATCGTCGACGACCTGTCGGTGAACC 38077 | | |||||| || | || || | |||||| | || ||| ||||| | | Sbjct 533 CCTATCAGCACCTCGTGCGCGATGCATGGACGCACGTAACCGGCGAGCTGTCCGAAGCAC 592 Query 38078 TCGGCGTCCCCGTCCTCGCCACCAACCTC 38106 |||| || |||||| |||| |||||||| Sbjct 593 TCGGGGTGCCCGTCTACGCCGCCAACCTC 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179648468441000