Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_030921.1 Length=49768 Score E Sequences producing significant alignments: (Bits) Value seq46163 120 1e-22 seq45817 91.5 5e-14 >seq46163 Length=1271 Score = 120 bits (132), Expect = 1e-22 Identities = 297/441 (67%), Gaps = 36/441 (8%) Strand=Plus/Plus Query 18290 GAAAGGAGCAACACTGCAATGAGTTTCAGAACAGCGTATGGCTACAAGTACTCCGAGAAC 18349 ||||||| |||| | ||||||||| | || || || ||| | | | ||||||||| Sbjct 710 GAAAGGAAGTACACC-CGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAAC 768 Query 18350 GGTTGGCGGATGTGCAACCGCGACGAGTGCGTCACGGTCACCGTCGCCGGCATGGGCCTC 18409 |||||||| ||||||||||| ||||| |||| || || | ||| || || |||| Sbjct 769 GGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTC 828 Query 18410 CACGTCAGAT-CCG----GTTACGCA----------GCAGAGG-TGCTCGGCGCGTGGGT 18453 ||| ||| ||| | | |||| || || | |||||||| ||| | Sbjct 829 ---GTC-GATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCT 884 Query 18454 CCGCTGGTACCACGAGAACGTCGAGCCCATCGACCTGTACAAGCCCCTCGACGACTGGGG 18513 |||||| || |||||||| ||| |||| |||| || ||||| Sbjct 885 GTACTGGTATGACCGCAACGTCGAAGAGATC-ACCT-------CCCC----CGTGTGGGG 932 Query 18514 ATGGTCGAACACCAACGACGT-CGCGACGTCGAATCACCTCTCCGGCACCGGGGTCGACC 18572 ||||| ||| ||||| || ||| | |||||||| | ||||||| || ||| Sbjct 933 GTGGTCTGCCACTAACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACG 992 Query 18573 TCAACGCCACCCAGTACCCGTGGGGGCGGCGCGTCATGCCGGCCGAC-CGCATCGCGAAG 18631 | | || || ||||||| ||| |||| | ||| |||| | |||| || ||| Sbjct 993 TGATGGCACCCAAGTACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAG-GCCAAG 1051 Query 18632 GTCCGGCGCGGTCTCGCCCTGTTCGAGGGCAACATCTTCTGGGGCGCCGACTGGTCGCGC 18691 ||||| || || || |||||||||||| | ||||||||| ||||||||||||| Sbjct 1052 GTCCGCAAGGGCCTGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGC 1111 Query 18692 GCCGACGAGATGCACTACCAG 18712 |||||||||||||||||||| Sbjct 1112 CCCGACGAGATGCACTACCAG 1132 >seq45817 Length=532 Score = 91.5 bits (100), Expect = 5e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 34304 CATCGTGTCCGAACCCGGCATGTACGAGGTCGTCATCCGATCAGACAAGCCGGAGGCCGC 34363 ||||||||||||| | |||||||||||||||||||| || || |||||||| ||||| | Sbjct 109 CATCGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGT 50 Query 34364 CGCGTTCCGCCGGTGGATCACCGGTTCGGTGCTCCCCGAGATCCG 34408 || |||||| || | | || ||| |||| || ||| ||||| Sbjct 49 CGAGTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159040095695000