Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_030935.1 Length=17727 Score E Sequences producing significant alignments: (Bits) Value seq46163 111 2e-20 >seq46163 Length=1271 Score = 111 bits (122), Expect = 2e-20 Identities = 287/427 (67%), Gaps = 33/427 (8%) Strand=Plus/Plus Query 3239 ACGCGATGAGCTTCCGCACCGTCTACGGCTACACGTACAGCGAGAACGGCTGGCGCATGT 3298 || ||||||| |||||||||| |||||| | ||| ||||||||| ||||| |||| Sbjct 722 ACCCGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATGT 781 Query 3299 GCAACGCCGACGAGACTGTCGTGGTTCGCGTGGCCG-----------GT--ATGCCGCTA 3345 ||||| ||||| | | | || ||| | | || || || |||| Sbjct 782 GCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCAC 841 Query 3346 CGCGTGCGCGGCGGGTACGCCGCCGAAGTTC-TCGGCGCGTGGGCGCGCTGGTACCACGC 3404 ||| ||||| ||| | |||| || || ||||||| ||| | |||||| || Sbjct 842 CGC-TGCGCAA-GGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCG 899 Query 3405 CAACGTCGAACCCATCGACCGGTACAAGCCGCTCGACGACTGGGGCTGGTCGGCGACCAA 3464 |||||||||| ||| ||| || | || ||||| ||||| || || || Sbjct 900 CAACGTCGAAGAGATC-ACCT-------CCCC----CGTGTGGGGGTGGTCTGCCACTAA 947 Query 3465 CGACGT-CGGCAACAGCAACCACCTGTCCGGTACCGCCCTCGACCTCAACGCCACGCAA- 3522 ||| || || |||||| || |||||| | || ||||| | ||| | | || || ||| Sbjct 948 CGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGC-ACCCAAG 1006 Query 3523 TACCCGTGGG-GCGCTCGCACCATGCCAGCGGCGCGAAAAGCGTTGGTGCGCAAGGGATT 3581 ||||| ||| ||| | ||| ||| || || | || ||| |||||||| | Sbjct 1007 TACCCCTGGCAGCGGTA-CACGATGGATGCCGCCACGCAGGCCAAGGTCCGCAAGGGCCT 1065 Query 3582 GGCGCTGTTCGAGGGAACGATCTTCTGGGGCGCGGACTGGGACCGCGCCGACGAAATGCA 3641 ||||||||||||||| || | ||||||||| |||||| ||| ||||||| ||||| Sbjct 1066 GGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGCA 1125 Query 3642 CTACCAG 3648 ||||||| Sbjct 1126 CTACCAG 1132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 56574782602500