Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq46163 111 6e-20 seq45817 93.3 1e-14 seq42164 80.6 9e-11 >seq46163 Length=1271 Score = 111 bits (122), Expect = 6e-20 Identities = 297/442 (67%), Gaps = 38/442 (9%) Strand=Plus/Plus Query 18610 GAAAGGAGCAACACTGCAATGAGTTTCAGAACAGCGTACGGCTACAAGTACTCCGAGAAC 18669 ||||||| |||| | ||||||||| | || || |||||| | | | ||||||||| Sbjct 710 GAAAGGAAGTACACC-CGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAAC 768 Query 18670 GGTTGGCGGATGTGCAACCGCGACGAGTGCGTCACGGT-CACAGTCGCCGGCATGGGCCT 18728 |||||||| ||||||||||| ||||| |||| || || | || ||| || || ||| Sbjct 769 GGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCA-TCGACGAGCTGTACCT 827 Query 18729 CCACGTCAGAT-CCG----GGTACGCA----------GCAGAGG-TGCTCGGCGCGTGGG 18772 | ||| ||| ||| | | |||| || || | |||||||| ||| Sbjct 828 C---GTC-GATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGC 883 Query 18773 TCCGCTGGTACCACGAGAACGTCGAGCCCATCGACCTGTACAAGCCGCTCGACGACTGGG 18832 | |||||| || |||||||| ||| |||| || | || |||| Sbjct 884 TGTACTGGTATGACCGCAACGTCGAAGAGATC-ACCT-------CCCC----CGTGTGGG 931 Query 18833 GATGGTCGAACACCAACGACGT-CGCGACGTCGAATCACCTCTCCGGCACCGGGGTCGAC 18891 | ||||| ||| ||||| || ||| | |||||||| | ||||||| || ||| Sbjct 932 GGTGGTCTGCCACTAACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGAC 991 Query 18892 CTCAACGCCACCCAGTACCCGTGGGGCCGGCGCGTCATGCCAGCTGAC-CGCATCGCGAA 18950 | | || || ||||||| ||| ||| | ||| || | | |||| || || Sbjct 992 GTGATGGCACCCAAGTACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAG-GCCAA 1050 Query 18951 GGTCCGGCGCGGTCTCGCCCTGTTCGAGGGCAACATCTTCTGGGGCGCCGACTGGTCGCG 19010 |||||| || || || |||||||||||| | ||||||||| |||||||||||| Sbjct 1051 GGTCCGCAAGGGCCTGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCG 1110 Query 19011 CGCCGACGAGATGCACTACCAG 19032 | |||||||||||||||||||| Sbjct 1111 CCCCGACGAGATGCACTACCAG 1132 >seq45817 Length=532 Score = 93.3 bits (102), Expect = 1e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 35396 ATCGTGTCCGAGTCCGGCATGTACGAGGTCGTCATCCGGTCGGATAAGCCCGAGGCTGTC 35455 ||||||||||| | |||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 108 ATCGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGTC 49 Query 35456 GCGTTCCGCCGCTGGATCACCGGGACCGTGCTCCCCGAGATCCG 35499 | |||||| || | | || || || || || ||| ||||| Sbjct 48 GAGTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCG 5 >seq42164 Length=289 Score = 80.6 bits (88), Expect = 9e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4105 AGGAAAGGAGGCCCCCGTGGCCACTCTCAAAGAAGGCCTCGCGGAGCGCCTCGGCATCGA 4164 |||||||||| || ||||| || || || || |||||||| ||| ||||| ||||| Sbjct 119 AGGAAAGGAGCCCATTGTGGCAACCCTGAATGAGGGCCTCGCCAAGCTGCTCGGTATCGA 60 Query 4165 CGCCGATGCGGACGACGAGACCGCGTTGAAGGCGCTCGACGAAGCTCTCGAGGAGCG 4221 ||||| || |||||||||||| ||| || || |||||| ||||| ||||| Sbjct 59 TGCCGACGCCGACGACGAGACCATTTTGTCTGCTGCCGCCGAAGCGCTCGAAGAGCG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175740425068000