Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031052.1 Length=57804 Score E Sequences producing significant alignments: (Bits) Value seq39761 147 8e-31 seq38458 141 3e-29 >seq39761 Length=1115 Score = 147 bits (162), Expect = 8e-31 Identities = 259/363 (71%), Gaps = 12/363 (3%) Strand=Plus/Plus Query 41870 TCGATCCACCTCGCGCGCGAACTCGCCCGCTGCTGGGGCAATATCCAGTTCGGTGTGTCC 41929 ||| | |||||| |||||||||||| || ||||||||| | |||| ||| || | Sbjct 407 TCGGTGCACCTCATGCGCGAACTCGCGCGAGTCTGGGGCAACGTGCAGTACGGCGTCAAC 466 Query 41930 GAGCTCCGCCGCGACGACGTCAAGGGCGAATCCGAAATGCAGGCGTACGCATGGGATTTG 41989 ||||| | |||||||||| | |||||||||||| | ||||||| || |||||| || Sbjct 467 GAGCTGCACCGCGACGACTCCCGGGGCGAATCCGAGGTTCAGGCGTGGGCGTGGGATGTG 526 Query 41990 GAAACCAACGCCCGCAACGTCACG-AGCTTCATCGTGCCGCACACCCGCGACACGAAGCG 42048 | |||||| ||||| | | || | ||||||||| || || ||||| | ||| | Sbjct 527 CAGACCAACACCCGC-TCTACGCGCACCTTCATCGTCCCCCATGCCCGCATGTCAAAGGG 585 Query 42049 G-GGCGTGAAGAAGCTCACCGACATGCGCGACATCTACG-AGAACAACGCGAACTCCGGC 42106 | | || ||||| ||||||||| | | |||||| ||| | |||||| || | |||| Sbjct 586 GCGCCGCCAAGAA-CTCACCGACCTCGGTGACATC-ACGAACAACAACAACAA-TGCGGC 642 Query 42107 GCGCGTCGC-CTG--CGGGAGTGCATCTTCGCGGTCCTGCCGCCGTGGTTCATCGACGAG 42163 ||| |||| ||| || ||||||||| ||| || |||| |||||||| ||| | | Sbjct 643 -CGC-TCGCGCTGTCCGTGAGTGCATCAACGCCATCTTGCCCAAGTGGTTCACCGAAGCG 700 Query 42164 GCAGTCGACCGCTGCAACGCCACCCTCAAGGACGGGGGCGGGGTACCGCTGGCTCAGCGG 42223 ||| ||| |||||| ||||| || || |||| | || || || || | |||| Sbjct 701 GCACAGGACATCTGCAAGGCCACGCTGGAGAACGGCGAGGGCGTGCCCTTGCCCAAGCGC 760 Query 42224 ATC 42226 ||| Sbjct 761 ATC 763 >seq38458 Length=1404 Score = 141 bits (156), Expect = 3e-29 Identities = 180/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 45436 CAGAAGAAGGCTGACCGTGGCTAACTCCGCAGGAGTCATCAAGGAATCCATCTGGCGCGA 45495 |||| |||| |||||||||||||| || ||| | |||||||||| ||||||||||| Sbjct 456 CAGAGAAAGGAACACCGTGGCTAACTCGGCCGGAATGCTCAAGGAATCAATCTGGCGCGA 397 Query 45496 CCGCGACTTCCGCGCCCTGTCCCGCACCGCCCAAGCCACCTACCTGCAACTCATCTCGCA 45555 | || | ||||| || || | |||||||| ||| |||||| ||| || || || Sbjct 396 CGGCCATTTCCGAGCGCTCACGCGCACCGCGCAATGCACCTATGCGCAGCTGCTCAGTCA 337 Query 45556 GAAGGAACTCGACCGCGCCGGACTCCTCCCGCTGCAACCCACCAAATGGGTCAAGGGCTG 45615 |||||| || ||||||||||| | | || || ||| |||||| |||| |||||| || Sbjct 336 GAAGGATCTGGACCGCGCCGGGATGCAACCACTTCAAATCACCAAGTGGGCCAAGGGGTG 277 Query 45616 CGACGCCATGTCCCTCGACGACCTCTACACCGACCTCAAGGAACTCCA-AGCGACCCGGT 45674 | ||| |||||| | | ||||| | |||||||| | || || | |||| |||| Sbjct 276 CAACGAGATGTCCATTCATGACCTACAGGCCGACCTCGACGAGCTGGAGCGCGA-ACGGT 218 Query 45675 TCGTG 45679 ||||| Sbjct 217 TCGTG 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184739798269000