Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031061.1 Length=53431 Score E Sequences producing significant alignments: (Bits) Value seq46163 129 2e-25 >seq46163 Length=1271 Score = 129 bits (142), Expect = 2e-25 Identities = 287/425 (68%), Gaps = 27/425 (6%) Strand=Plus/Plus Query 19451 CACCCGATGAGCTTTCGTACGGCCTACGGCTACAAGTACTCGGAGAACGGTTGGCGAATG 19510 ||||||||||| || || || || |||||| | | | || |||||||||||||| ||| Sbjct 721 CACCCGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATG 780 Query 19511 TGCAACCGCGACGAGTGCGTCACGGTCACCGTTGCCGGGATGGGCCTGCACGT--CCGCT 19568 |||||||| ||||| |||| || || | | | || | || ||| || |||| Sbjct 781 TGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCA 840 Query 19569 CCG----GCTACGCCGCCGAGGTG------CTCGGCGCGTGGGTTCGCTGGTACCACGAG 19618 ||| || | | |||| | || |||||||| ||| | |||||| || Sbjct 841 CCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGC 900 Query 19619 CACGTCGAGCGCATCGACCTGTACAAGCCGCTCGACGACTGGGGGTGGTCGAACACCAAC 19678 ||||||| ||| |||| || | || ||||||||||| ||| ||| Sbjct 901 AACGTCGAAGAGATC-ACCT-------CCCC----CGTGTGGGGGTGGTCTGCCACTAAC 948 Query 19679 GACGT-CGCGACGTCGAATCACCTGTCGGGCACTGCCGTCGACCTCAACGCCACCCAGTA 19737 || || ||| | ||||||||| | ||||| || || ||| | | || || |||| Sbjct 949 GATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAAGTA 1008 Query 19738 CCCGTGGGGCCGCCGCGTAATGCCGGCCGAC-CGCATCGCGAAGGTGCGCCGGGGTCTCG 19796 ||| ||| || | ||| |||| | |||| || ||||| ||| ||| || | Sbjct 1009 CCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAG-GCCAAGGTCCGCAAGGGCCTGG 1067 Query 19797 CCCTGTTCGAGGGCACCATCTTCTGGGGCGCCGACTGGTCACGGGCCGACGAGATGCACT 19856 | |||||||||||| | | ||||||||| ||||||||| || ||||||||||||||| Sbjct 1068 CGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGCACT 1127 Query 19857 ACCAG 19861 ||||| Sbjct 1128 ACCAG 1132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170754631599500