Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031097.1 Length=52077 Score E Sequences producing significant alignments: (Bits) Value seq39852 140 1e-28 seq46163 132 2e-26 >seq39852 Length=3441 Score = 140 bits (154), Expect = 1e-28 Identities = 146/192 (76%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 36228 GACCACCACCTGTCGCGGTACGCCTGCTATCTCATCGCCCTCAACGGCGATCCTCGGAAG 36287 ||| ||||||| || |||||||||||||||||| |||| ||||| |||||||| || ||| Sbjct 1327 GACTACCACCTCTCCCGGTACGCCTGCTATCTCGTCGCACTCAATGGCGATCCACGCAAG 1386 Query 36288 CCAGAGATCGCCGCCGCACAAACGTATTTCGTCATCCGGACGCGTGAGGCCGAG------ 36341 || || ||||| ||||| || || || ||||||||| ||| |||||||||||| Sbjct 1387 CCTGAAATCGCAGCCGCGCAGACATACTTCGTCATCAAGACCCGTGAGGCCGAGACCGCC 1446 Query 36342 GTGTCGGCACCGGCACTGACCGGACCGGAGCTGCTCGCCGCTGCGGTCCTCGAATCCCAG 36401 | | || || || || || || | || || |||||||| || || |||||| | ||| Sbjct 1447 ACGGCCGCGCCCGCGCTCACAGGCACCGACCTACTCGCCGCCGCAGTGCTCGAAGCTCAG 1506 Query 36402 CGCGTCATCGAG 36413 || | |||||| Sbjct 1507 CGGATGATCGAG 1518 >seq46163 Length=1271 Score = 132 bits (146), Expect = 2e-26 Identities = 288/425 (68%), Gaps = 27/425 (6%) Strand=Plus/Plus Query 19463 CACCCGATGAGCTTTCGTACGGCCTACGGCTACAAGTACTCGGAGAACGGTTGGCGAATG 19522 ||||||||||| || || || || |||||| | | | || |||||||||||||| ||| Sbjct 721 CACCCGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATG 780 Query 19523 TGCAACCGCGACGAGTGCGTCACGGTCACCGTCGCCGGGATGGGCCTGCACGT--CCGCT 19580 |||||||| ||||| |||| || || | ||| || | || ||| || |||| Sbjct 781 TGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCA 840 Query 19581 CCG----GCTACGCCGCCGAGGTG------CTCGGCGCGTGGGTTCGCTGGTACCACGAG 19630 ||| || | | |||| | || |||||||| ||| | |||||| || Sbjct 841 CCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGC 900 Query 19631 CACGTCGAGCGCATCGACCTGTACAAGCCGCTCGACGACTGGGGGTGGTCGAACACCAAC 19690 ||||||| ||| |||| || | || ||||||||||| ||| ||| Sbjct 901 AACGTCGAAGAGATC-ACCT-------CCCC----CGTGTGGGGGTGGTCTGCCACTAAC 948 Query 19691 GACGT-CGCGACGTCGAATCACCTGTCGGGCACTGCCGTCGACCTCAACGCCACCCAGTA 19749 || || ||| | ||||||||| | ||||| || || ||| | | || || |||| Sbjct 949 GATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAAGTA 1008 Query 19750 CCCGTGGGGCCGCCGCGTAATGCCGGCCGAC-CGCATCGCGAAGGTGCGCCGGGGTCTCG 19808 ||| ||| || | ||| |||| | |||| || ||||| ||| ||| || | Sbjct 1009 CCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAG-GCCAAGGTCCGCAAGGGCCTGG 1067 Query 19809 CCCTGTTCGAGGGCACCATCTTCTGGGGCGCCGACTGGTCACGGGCCGACGAGATGCACT 19868 | |||||||||||| | | ||||||||| ||||||||| || ||||||||||||||| Sbjct 1068 CGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGCACT 1127 Query 19869 ACCAG 19873 ||||| Sbjct 1128 ACCAG 1132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166424442788500