Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031118.1 Length=54167 Score E Sequences producing significant alignments: (Bits) Value seq46163 113 2e-20 seq42164 80.6 9e-11 >seq46163 Length=1271 Score = 113 bits (124), Expect = 2e-20 Identities = 280/419 (67%), Gaps = 27/419 (6%) Strand=Plus/Plus Query 18280 ATGAGTTTCAGAACAGCGTACGGCTACAAGTACTCCGAGAACGGTTGGCGGATGTGCAAC 18339 ||||||||| | || || |||||| | | | ||||||||||||||||| ||||||||| Sbjct 727 ATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATGTGCAAC 786 Query 18340 CGCGACGAGTGCGTCACGGTCACCGTCGCCGGCATGGGCCTCCACGTGAGATC-CGGTTA 18398 || ||||| |||| || || | ||| || || |||| || | | | | | Sbjct 787 CGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCACCGCTG 846 Query 18399 CGCA----------GCAGAGG-TGCTCGGCGCGTGGGTGCGCTGGTACCACGAGAACGTC 18447 |||| || || | |||||||| ||| || |||||| || |||||| Sbjct 847 CGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGCAACGTC 906 Query 18448 GAGCCCATCGACCTGTACAAGCCCCTCGACGACTGGGGATGGTCGAACACCAACGACGT- 18506 || ||| |||| |||| || ||||| ||||| ||| ||||| || Sbjct 907 GAAGAGATC-ACCT-------CCCC----CGTGTGGGGGTGGTCTGCCACTAACGATGTT 954 Query 18507 CGGCAACTCGAACCACTTGTCGGGCACCGGGGTCGACCTCAACGCCACCCAGTACCCGTG 18566 || |||| || ||| || | ||||||| || ||| | | || || ||||||| || Sbjct 955 CGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAAGTACCCCTG 1014 Query 18567 GGGCCGCCGCGTCATGCCGGCCGAT-CGTATCGCGAAGGTCCGGCGCGGTCTCGCCCTGT 18625 | || | ||| |||| || | || |||||||| || || || |||| Sbjct 1015 GCAGCGGTACACGATGGATGCCGCCACGCAG-GCCAAGGTCCGCAAGGGCCTGGCGCTGT 1073 Query 18626 TCGAGGGCAACATCTTCTGGGGCGCCGACTGGTCGCGCGCCGACGAGATGCACTACCAG 18684 |||||||| | ||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1074 TCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGCACTACCAG 1132 >seq42164 Length=289 Score = 80.6 bits (88), Expect = 9e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4107 AGGAAAGGAGGCCCCCGTGGCCACTCTCAAAGAAGGCCTCGCGGAGCGCCTCGGCATCGA 4166 |||||||||| || ||||| || || || || |||||||| ||| ||||| ||||| Sbjct 119 AGGAAAGGAGCCCATTGTGGCAACCCTGAATGAGGGCCTCGCCAAGCTGCTCGGTATCGA 60 Query 4167 CGCCGATGCGGACGACGAGACCGCGTTGAAGGCGCTCGACGAAGCTCTCGAGGAGCG 4223 ||||| || |||||||||||| ||| || || |||||| ||||| ||||| Sbjct 59 TGCCGACGCCGACGACGAGACCATTTTGTCTGCTGCCGCCGAAGCGCTCGAAGAGCG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173108412223500