Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031122.1 Length=44929 Score E Sequences producing significant alignments: (Bits) Value seq50019 96.9 1e-15 >seq50019 Length=220 Score = 96.9 bits (106), Expect = 1e-15 Identities = 129/173 (75%), Gaps = 10/173 (6%) Strand=Plus/Minus Query 3694 CGACGGCCTCACCCTCGACGGCTACGGCGCAGTGTTCAAC-CGCGAGACGATCATCGACT 3752 ||||||||||||| | || ||||||||||| ||||||||| ||| || ||||||| Sbjct 170 CGACGGCCTCACCTTTGAAGGCTACGGCGCGGTGTTCAACTCGC-CCACCCGGATCGACT 112 Query 3753 CGTGGGAAGGCAAGTTCAAGGAGAAGATCGCGCCCGGCTCGAT---GAAGCGATCATTTC 3809 | |||||||||| ||| | || ||||||| ||||| || | ||| || ||| Sbjct 111 CCTGGGAAGGCACATTCGATGAACAGATCGCACCCGGTGCGTTCCGTAAG---TCGCTTC 55 Query 3810 GCGAGACGC-CGCCGCGGATCCAGTTCGACCACGGCCGGCACCCGATGATCGG 3861 ||||| ||| | || | |||||||||||||||| | ||||| ||||||| Sbjct 54 GCGAG-CGCACACCCAAGTTCCAGTTCGACCACGGACACCACCCCCTGATCGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143564627706500